Browse Element(s) Details

Os.52272.1.S1_at

Description

gb:AK066011.1
DB_XREF= gi:32976029
TID=Os.52272.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013048K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048K11, full insert sequence.
FL= gb:AK066011.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01400	11/11	glycyl-tRNA synthetase beta subunit family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01340	OsAffx.27416.1.S1_at	11/11	6	+	208204..209107	CCT motif family protein
LOC_Os06g01350	Os.8578.1.S1_at	11/11	6	+	212020..213695	Transferase family protein, expressed
LOC_Os06g01350	OsAffx.28276.1.S1_x_at	1/11	6	+	212020..213695	Transferase family protein, expressed
LOC_Os06g01360	Os.11622.1.S1_at	10/11	6	+	214046..217208	Homogentisate 1,2-dioxygenase, putative, expressed
LOC_Os06g01370	Os.14023.2.S1_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.2.S1_x_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.1.S1_x_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.1.S1_at	10/11	6	+	218460..220117	expressed protein
LOC_Os06g01390	Os.9192.1.S1_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	Os.9192.2.S1_x_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	Os.9192.2.S1_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	OsAffx.28164.2.S1_at	1/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01400	Os.52272.1.S1_at	11/11	6	+	232787..243624	glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400	Os.17279.1.S1_s_at	11/11	6	+	232787..243624	glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400	Os.17279.1.S1_at	11/11	6	+	232787..243624	glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01410	Os.7390.1.S1_at	10/11	6	+	243855..246786	glutamine cyclotransferase precursor, putative, expressed
LOC_Os06g01420	NA	NA	6	+	250421..256376	retrotransposon protein, putative, unclassified
LOC_Os06g01430	NA	NA	6	+	257208..260132	retrotransposon protein, putative, unclassified
LOC_Os06g01440	Os.20250.1.S1_at	10/11	6	+	265683..271411	Integral membrane protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0045995	biological_process	regulation of embryonic development
GO:0009507	cellular_component	chloroplast
GO:0004820	molecular_function	glycine-tRNA ligase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52272.1.S1_at--354--883	1	Chr06:242973..242997 (25 bp)	TGATCCTTTTTTCTCTCGTGTGAAA	LOC_Os06g01400
Os.52272.1.S1_at--526--27	1	Chr06:242999..243023 (25 bp)	ATATGTGCTTTGCATCGTCTATTCT	LOC_Os06g01400
Os.52272.1.S1_at--1103--903	1	Chr06:243009..243033 (25 bp)	TGCATCGTCTATTCTTTCGGGCGTG	LOC_Os06g01400
Os.52272.1.S1_at--83--369	1	Chr06:243022..243046 (25 bp)	CTTTCGGGCGTGCTGTATATTCTGT	LOC_Os06g01400
Os.52272.1.S1_at--535--877	1	Chr06:243044..243068 (25 bp)	TGTTTACTTGTATCCACATTCCACC	LOC_Os06g01400
Os.52272.1.S1_at--65--207	1	Chr06:243059..243083 (25 bp)	ACATTCCACCCTGTAGGTGTTGACA	LOC_Os06g01400
Os.52272.1.S1_at--956--711	1	Chr06:243152..243176 (25 bp)	GTCATGGCGGTGAGCTTAATTTTCG	LOC_Os06g01400
Os.52272.1.S1_at--1141--1047	1	Chr06:243167..243191 (25 bp)	TTAATTTTCGAGTACTAAGCATCTA	LOC_Os06g01400
Os.52272.1.S1_at--337--271	1	Chr06:243183..243207 (25 bp)	AAGCATCTACTTAGCCATTTATTAC	LOC_Os06g01400
Os.52272.1.S1_at--106--205	1	Chr06:243220..243244 (25 bp)	ACTTTGGTAATGGTGTATGCTTTGC	LOC_Os06g01400
Os.52272.1.S1_at--876--1013	1	Chr06:243235..243259 (25 bp)	TATGCTTTGCTATGTGGTTGGTGAT	LOC_Os06g01400

Target Sequence

TGATCCTTTTTTCTCTCGTGTGAAATATATGTGCTTTGCATCGTCTATTCTTTCGGGCGTGCTGTATATTCTGTTTACTT
GTATCCACATTCCACCCTGTAGGTGTTGACATAAAAGCCTTTGCGGACGCTTCTCTGGAACTGCTGCAACCCCTAGAAGA
TTTCTTTACAAATGTTTTTGTCATGGCGGTGAGCTTAATTTTCGAGTACTAAGCATCTACTTAGCCATTTATTACTAAAT
GATTTAGACTTTGGTAATGGTGTATGCTTTGCTATGTGGTTGGTGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis