Browse Element(s) Details


Os.7390.1.S1_at

Description gb:AK070147.1
DB_XREF= gi:32980171
TID=Os.7390.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041F14, full insert sequence.
FL= gb:AK070147.1 gb:AK122135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0141010/11glutamine cyclotransferase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01370Os.14023.2.S1_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.2.S1_x_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.1.S1_x_at11/116+218460..220117expressed protein
LOC_Os06g01370Os.14023.1.S1_at10/116+218460..220117expressed protein
LOC_Os06g01390Os.9192.1.S1_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390Os.9192.2.S1_x_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390Os.9192.2.S1_at11/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390OsAffx.28164.2.S1_at1/116+226847..231808Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01400Os.52272.1.S1_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400Os.17279.1.S1_s_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400Os.17279.1.S1_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01410Os.7390.1.S1_at10/116+243855..246786glutamine cyclotransferase precursor, putative, expressed
LOC_Os06g01420NANA6+250421..256376retrotransposon protein, putative, unclassified
LOC_Os06g01430NANA6+257208..260132retrotransposon protein, putative, unclassified
LOC_Os06g01440Os.20250.1.S1_at10/116+265683..271411Integral membrane protein, expressed
LOC_Os06g01450OsAffx.15214.1.S1_x_at11/116+270281..274436dehydration-responsive family protein, putative, expressed
LOC_Os06g01450Os.49839.1.S1_at11/116+270281..274436dehydration-responsive family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7390.1.S1_at--142--5331Chr06:244867..244891 (25 bp)
GAAGTCCCCTATCTTAATGAACTGG
LOC_Os06g01410
Os.7390.1.S1_at--708--2131Chr06:244667..244691 (25 bp)
ACAGATTGCATAGCTAGAGTCTCCC
LOC_Os06g01410
Os.7390.1.S1_at--63--6111Chr06:244651..244675 (25 bp)
GAGTCTCCCATGAAGATGGCCTAGT
LOC_Os06g01410
Os.7390.1.S1_at--460--3691Chr06:244631..244655 (25 bp)
CTAGTGGTGGGCTGGATCTTTCTTC
LOC_Os06g01410
Os.7390.1.S1_at--918--6411NONE
GATCTTTCTTCATGAGCTGAGGCAA
NONE
Os.7390.1.S1_at--262--5151Chr06:244503..244527 (25 bp)
GCAACACTTGTGGAATTCTGGCAAT
LOC_Os06g01410
Os.7390.1.S1_at--310--6411Chr06:244087..244111 (25 bp)
GATCTGTAGAGAAGCTATGCCCCAA
LOC_Os06g01410
Os.7390.1.S1_at--1008--9151Chr06:244070..244094 (25 bp)
TGCCCCAAGGCAAGCTTTTATCGTT
LOC_Os06g01410
Os.7390.1.S1_at--771--6871Chr06:243948..243972 (25 bp)
GTATTGCATACACCTCTTAAGTGGA
LOC_Os06g01410
Os.7390.1.S1_at--780--51Chr06:243919..243943 (25 bp)
ATTGATTGGCAGTTTTCGGAGACTT
LOC_Os06g01410
Os.7390.1.S1_at--120--5991Chr06:243901..243925 (25 bp)
GAGACTTGTGTTGTATCTCGACAAA
LOC_Os06g01410
Target Sequence 
GAAGTCCCCTATCTTAATGAACTGGAATATATAAACGGTGAAGTATGGGCAAATGTCTGGCAGACAGATTGCATAGCTAG
AGTCTCCCATGAAGATGGCCTAGTGGTGGGCTGGATCTTTCTTCATGAGCTGAGGCAACACTTGTGGAATTCTGGCAATA
CGGAAATCGATGTTCTAAATGGTATAGCTTGGGATGAAGAAAATCAAAGATTATTTGTGACCGGAAAATTGTGGCCAAAG
ATCTATGAAATTAAGCTACGGCCTGTAGATGGGCCACAAGATGGATCTGTAGAGAAGCTATGCCCCAAGGCAAGCTTTTA
TCGTTGAGGTGTAGTGGATCTCTCTAGGGTGAGAAGAGAAGAGAAGAGAAGAGAAGATATAGNATATCTTGTTTTTATAT
CAGTATGTTACAATGCACAGATGTATTGCATACACCTCTTAAGTGGAGGTAATTGATTGGCAGTTTTCGGAGACTTGTGT
TGTATCTCGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis