Browse Element(s) Details


Os.49839.1.S1_at

Description gb:AK111870.1
DB_XREF= gi:37988533
TID=Os.49839.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49839 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033045F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033045F24, full insert sequence.
FL= gb:AK111870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0145011/11dehydration-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01410Os.7390.1.S1_at10/116+243855..246786glutamine cyclotransferase precursor, putative, expressed
LOC_Os06g01420NANA6+250421..256376retrotransposon protein, putative, unclassified
LOC_Os06g01430NANA6+257208..260132retrotransposon protein, putative, unclassified
LOC_Os06g01440Os.20250.1.S1_at10/116+265683..271411Integral membrane protein, expressed
LOC_Os06g01450OsAffx.15214.1.S1_x_at11/116+270281..274436dehydration-responsive family protein, putative, expressed
LOC_Os06g01450Os.49839.1.S1_at11/116+270281..274436dehydration-responsive family protein, putative, expressed
LOC_Os06g01460Os.52642.1.S1_at11/116+275727..281165expressed protein
LOC_Os06g01470Os.56352.1.S1_at11/116+281348..283538LOC569692 protein, putative, expressed
LOC_Os06g01480Os.52815.1.S1_at11/116+288313..293071No apical meristem protein, expressed
LOC_Os06g01490Os.4421.1.S1_at11/116+296278..300787Monocopper oxidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49839.1.S1_at--827--1091Chr06:271176..271200 (25 bp)
AGTGGCTTTTCTTTTCAGCAGCAGA
LOC_Os06g01450
Os.49839.1.S1_at--214--1511Chr06:271160..271184 (25 bp)
AGCAGCAGATGTTCCCTTTTGGTTT
LOC_Os06g01450
Os.49839.1.S1_at--435--9211Chr06:271134..271158 (25 bp)
TCCAATTTTCGTTTAGCTCCAGGTT
LOC_Os06g01450
Os.49839.1.S1_at--776--1591Chr06:271120..271144 (25 bp)
AGCTCCAGGTTCAGGTTGTGTGTAA
LOC_Os06g01450
Os.49839.1.S1_at--1001--8631Chr06:271078..271102 (25 bp)
TGGGATAGTATCACCACGATCTTGT
LOC_Os06g01450
Os.49839.1.S1_at--415--4051Chr06:271062..271086 (25 bp)
CGATCTTGTGGCCTTGGTTCATTGG
LOC_Os06g01450
Os.49839.1.S1_at--644--7891Chr06:271047..271071 (25 bp)
GGTTCATTGGCTGCATTGCATTCTT
LOC_Os06g01450
Os.49839.1.S1_at--5--7391Chr06:271022..271046 (25 bp)
GTGAGTTGTGATGCTTACATTTCTA
LOC_Os06g01450
Os.49839.1.S1_at--253--3471Chr06:270956..270980 (25 bp)
CAGGGCAAGCCTGACCTTGTTATTT
LOC_Os06g01450
Os.49839.1.S1_at--259--5831Chr06:270944..270968 (25 bp)
GACCTTGTTATTTTCCTTGCCAAAG
LOC_Os06g01450
Os.49839.1.S1_at--987--10371Chr06:270934..270958 (25 bp)
TTTTCCTTGCCAAAGTTTATTGACA
LOC_Os06g01450
Target Sequence 
AGTGGCTTTTCTTTTCAGCAGCAGATGTTCCCTTTTGGTTTTTCCAATTTTCGTTTAGCTCCAGGTTCAGGTTGTGTGTA
AATATGAGGCGATGTGATTGGGATAGTATCACCACGATCTTGTGGCCTTGGTTCATTGGCTGCATTGCATTCTTGTGAGT
TGTGATGCTTACATTTCTATAATAGGCAGATAAAATGTTCTTTTTCTTCAGTAAAAAGAACAGGGCAAGCCTGACCTTGT
TATTTTCCTTGCCAAAGTTTATTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis