Browse Element(s) Details


OsAffx.15214.1.S1_x_at

Description tigr:9634.m00042
TID=OsAffx.15214.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=methyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0145011/11dehydration-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01410Os.7390.1.S1_at10/116+243855..246786glutamine cyclotransferase precursor, putative, expressed
LOC_Os06g01420NANA6+250421..256376retrotransposon protein, putative, unclassified
LOC_Os06g01430NANA6+257208..260132retrotransposon protein, putative, unclassified
LOC_Os06g01440Os.20250.1.S1_at10/116+265683..271411Integral membrane protein, expressed
LOC_Os06g01450OsAffx.15214.1.S1_x_at11/116+270281..274436dehydration-responsive family protein, putative, expressed
LOC_Os06g01450Os.49839.1.S1_at11/116+270281..274436dehydration-responsive family protein, putative, expressed
LOC_Os06g01460Os.52642.1.S1_at11/116+275727..281165expressed protein
LOC_Os06g01470Os.56352.1.S1_at11/116+281348..283538LOC569692 protein, putative, expressed
LOC_Os06g01480Os.52815.1.S1_at11/116+288313..293071No apical meristem protein, expressed
LOC_Os06g01490Os.4421.1.S1_at11/116+296278..300787Monocopper oxidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15214.1.S1_x_at--585--9111Chr06:271972..271996 (25 bp)
TGCTGTGCCTCCAAGAATAAGTCGT
LOC_Os06g01450
OsAffx.15214.1.S1_x_at--839--1151Chr06:271953..271977 (25 bp)
AGTCGTGGATCAGTTTCAGGCCTCA
LOC_Os06g01450
OsAffx.15214.1.S1_x_at--19--5612Chr09:20144021..20144068 (25 bp)
GAAATTGATTCCTCCACTAACCAAG
NONE
OsAffx.15214.1.S1_x_at--274--671Chr06:271764..271788 (25 bp)
ATGAACGTGGTACCTTCAGGCTCTG
LOC_Os06g01450
OsAffx.15214.1.S1_x_at--680--5631Chr06:271734..271758 (25 bp)
GACACCCTTGGTATTATCTATGAGA
LOC_Os06g01450
OsAffx.15214.1.S1_x_at--1041--4371Chr06:271690..271714 (25 bp)
CCAAGACTGGTGTGAGGCTTTCTCA
LOC_Os06g01450
OsAffx.15214.1.S1_x_at--469--911Chr06:271676..271700 (25 bp)
AGGCTTTCTCAACGTATCCGAGGAC
LOC_Os06g01450
OsAffx.15214.1.S1_x_at--612--8131Chr06:271655..271679 (25 bp)
GGACATATGACTTCATCCATGCTGA
LOC_Os06g01450
OsAffx.15214.1.S1_x_at--464--5751Chr06:271396..271420 (25 bp)
GACGTAACATACATTCTCCTGGAGA
LOC_Os06g01450
OsAffx.15214.1.S1_x_at--567--6231Chr06:271373..271397 (25 bp)
GATGGACCGGATTCTAAGGCCTGAA
LOC_Os06g01450
OsAffx.15214.1.S1_x_at--766--3051Chr06:271254..271278 (25 bp)
AATCTGGTCCATTCAACCCTGAGAA
LOC_Os06g01450
Target Sequence 
TGCTGTGCCTCCAAGAATAAGTCGTGGATCAGTTTCAGGCCTCACCACGGAGAAATTCCAAGAAGATAATAAGGTGTGGG
CAGAGAGAGCGGATTACTACAAGAAATTGATTCCTCCACTAACCAAGGGGCGATATAGGAACGTGATGGATATGAATGCA
GGGATGGGGGGATTCGCAGCTGCATTGATGAAGTATCCACTTTGGGTGATGAACGTGGTACCTTCAGGCTCTGCTCATGA
CACCCTTGGTATTATCTATGAGAGGGGATTCATTGGAACCTACCAAGACTGGTGTGAGGCTTTCTCAACGTATCCGAGGA
CATATGACTTCATCCATGCTGATAAAATATTCAGCTTTTATCAGGACAGGTGTGACGTAACATACATTCTCCTGGAGATG
GACCGGATTCTAAGGCCTGAAGGGACAGTGATTTTCAGGGACACGGTGGAGGTGTTAGTGAAGATACAATCAATTACAGA
AGGCATGCGGTGGAAGAGCCAAATAATGGATCACGAATCTGGTCCATTCAACCCTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15214.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis