Browse Element(s) Details


Os.56352.1.S1_at

Description gb:AK109910.1
DB_XREF= gi:32995119
TID=Os.56352.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-G11, full insert sequence.
FL= gb:AK109910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0147011/11LOC569692 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01420NANA6+250421..256376retrotransposon protein, putative, unclassified
LOC_Os06g01430NANA6+257208..260132retrotransposon protein, putative, unclassified
LOC_Os06g01440Os.20250.1.S1_at10/116+265683..271411Integral membrane protein, expressed
LOC_Os06g01450OsAffx.15214.1.S1_x_at11/116+270281..274436dehydration-responsive family protein, putative, expressed
LOC_Os06g01450Os.49839.1.S1_at11/116+270281..274436dehydration-responsive family protein, putative, expressed
LOC_Os06g01460Os.52642.1.S1_at11/116+275727..281165expressed protein
LOC_Os06g01470Os.56352.1.S1_at11/116+281348..283538LOC569692 protein, putative, expressed
LOC_Os06g01480Os.52815.1.S1_at11/116+288313..293071No apical meristem protein, expressed
LOC_Os06g01490Os.4421.1.S1_at11/116+296278..300787Monocopper oxidase precursor, putative, expressed
LOC_Os06g01500Os.10209.2.S1_at11/116+304994..307707IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01500Os.10209.1.S1_x_at10/116+304994..307707IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01500Os.10209.3.S1_x_at10/116+304994..307707IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56352.1.S1_at--382--8811Chr06:282984..283008 (25 bp)
TGTTGCTGATGCTCACCTGCAGAAG
LOC_Os06g01470
Os.56352.1.S1_at--40--8711Chr06:283029..283053 (25 bp)
TGTGCCAGCGGAAGCAATCCCTGTA
LOC_Os06g01470
Os.56352.1.S1_at--653--8531Chr06:283085..283109 (25 bp)
TGGACTCCTTACGACGCCGTGAATT
LOC_Os06g01470
Os.56352.1.S1_at--658--2571Chr06:283111..283135 (25 bp)
AACGTCTTTGATTCACGGTTGTCAA
LOC_Os06g01470
Os.56352.1.S1_at--564--6471Chr06:283170..283194 (25 bp)
GATAAAGCTCATCTGGCACTCGGTG
LOC_Os06g01470
Os.56352.1.S1_at--1008--1571Chr06:283239..283263 (25 bp)
AGCTCGGGTTAGTTGTGTGTCTTTT
LOC_Os06g01470
Os.56352.1.S1_at--250--2991Chr06:283339..283363 (25 bp)
AATGTCGATGTACGTTCCTCTCTAG
LOC_Os06g01470
Os.56352.1.S1_at--706--6851Chr06:283396..283420 (25 bp)
GTTTGCGATCCGTTTTTGCACGAAG
LOC_Os06g01470
Os.56352.1.S1_at--70--5211Chr06:283475..283499 (25 bp)
GCAATTGCTTGCCAACGAGCTACTG
LOC_Os06g01470
Os.56352.1.S1_at--274--5911Chr06:283491..283515 (25 bp)
GAGCTACTGGCTTTTTATGCTTGCT
LOC_Os06g01470
Os.56352.1.S1_at--274--4931Chr06:283509..283533 (25 bp)
GCTTGCTAAGCATTGGTCATATTCA
LOC_Os06g01470
Target Sequence 
TGTTGCTGATGCTCACCTGCAGAAGGCGCGGGAGCTGGCCTCTTCTGTGCCAGCGGAAGCAATCCCTGTACTCCTCCCAG
GGGTACCAGCCCAGGTCCTTCTGGACTCCTTACGACGCCGTGAATTCAACGTCTTTGATTCACGGTTGTCAAGGGGAGTT
CATGGGATATCTCCTTTGTGGTACCAGATAAAGCTCATCTGGCACTCGGTGCGGAAGAAGTACTGACTAACTCATCCACA
CAAGCACCCATAAAGAGCTCGGGTTAGTTGTGTGTCTTTTTTTTTACCAAAATGCAATAAGGTTGATAAACAGATTGAAA
AACTCTGACTTGTTGGTTGGTGCATGTATCTGAGCAATGTCGATGTACGTTCCTCTCTAGGATACACAAGTGTTGTTCGA
ATTGTTCGTTTTGTTTGCGATCCGTTTTTGCACGAAGCAGAGGAATGTAACAGGGTGGATGCTGTTTTTTTCTTTCTGTT
GAGTTTGTTGTGCAATTGCTTGCCAACGAGCTACTGGCTTTTTATGCTTGCTAAGCATTGGTCATATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis