Browse Element(s) Details


Os.10209.1.S1_x_at

Description gb:AK060638.1
DB_XREF= gi:32970656
TID=Os.10209.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10209 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU082316(E3368),D41461(S3973) correspond to a region of the predicted gene.~hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D03, full insert sequence.
FL= gb:AK060638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0150010/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01460Os.52642.1.S1_at11/116+275727..281165expressed protein
LOC_Os06g01470Os.56352.1.S1_at11/116+281348..283538LOC569692 protein, putative, expressed
LOC_Os06g01480Os.52815.1.S1_at11/116+288313..293071No apical meristem protein, expressed
LOC_Os06g01490Os.4421.1.S1_at11/116+296278..300787Monocopper oxidase precursor, putative, expressed
LOC_Os06g01500Os.10209.2.S1_at11/116+304994..307707IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01500Os.10209.1.S1_x_at10/116+304994..307707IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01500Os.10209.3.S1_x_at10/116+304994..307707IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01510Os.9332.2.S1_x_at1/116+311158..314242retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01520NANA6+315182..315772hypothetical protein
LOC_Os06g01534OsAffx.22848.4.S1_at2/116+318704..324531retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01534OsAffx.22848.3.S1_x_at1/116+318704..324531retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01534OsAffx.22848.4.S1_x_at1/116+318704..324531retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01550Os.43567.1.S1_x_at7/116+326878..327657transposon protein, putative, unclassified
LOC_Os06g01550Os.38172.1.S1_x_at3/116+326878..327657transposon protein, putative, unclassified
LOC_Os06g01560NANA6+329733..335889retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10209.1.S1_x_at--1022--6331Chr06:306448..306472 (25 bp)
GATGCGGCATTGCTGATCCAGTTGA
LOC_Os06g01500
Os.10209.1.S1_x_at--95--571Chr06:306433..306457 (25 bp)
ATCCAGTTGAACTACAGGGCTCACC
LOC_Os06g01500
Os.10209.1.S1_x_at--733--1291NONE
AGATGCGCTTGAGGGTCCTGACTAC
NONE
Os.10209.1.S1_x_at--4--6651Chr06:305538..305562 (25 bp)
GTTGACCCGCAGGAAGTTCGATCTT
LOC_Os06g01500
Os.10209.1.S1_x_at--1091--9771Chr06:305435..305459 (25 bp)
TAAGAGGCCATATCTCATCTCGTCT
LOC_Os06g01500
Os.10209.1.S1_x_at--960--451Chr06:305419..305443 (25 bp)
ATCTCGTCTAGTGGTTATCACGCAT
LOC_Os06g01500
Os.10209.1.S1_x_at--968--8071Chr06:305389..305413 (25 bp)
GGAGCTTGTAGCACTGTATCATCAT
LOC_Os06g01500
Os.10209.1.S1_x_at--327--6451Chr06:305344..305368 (25 bp)
GATAACCACCGTTGTTGTTTTCAGT
LOC_Os06g01500
Os.10209.1.S1_x_at--936--1991Chr06:305261..305285 (25 bp)
ACTAAGCAGCTGTTTGGTCCGGACG
LOC_Os06g01500
Os.10209.1.S1_x_at--760--8111Chr06:305241..305265 (25 bp)
GGACGTCCAGCCATTTTATTTGCTT
LOC_Os06g01500
Os.10209.1.S1_x_at--737--8751Chr06:305216..305240 (25 bp)
TGTACTCGTATGCTGTTGTTATCCA
LOC_Os06g01500
Target Sequence 
GATGCGGCATTGCTGATCCAGTTGAACTACAGGGCTCACCTGGCACACCGTTCACAGGTGCTTCGCTGCCTGCGTGATCT
GGCTGTGGCTAAGGCCAAGCTCAAGGAGATCAGATGCGCTTGAGGGTCCTGACTACATGGTGAGGACAGCAAAGAAGTCT
ATGCTTGATGAACTTGAAGGTATGCTGGAGATTGTGGACCCTCAGCCACCAGGGAAGCAGAGGTCGTTGACCCGCAGGAA
GTTCGATCTTCCAGAAGGAGGGCCGATCACAGATGAGAAGATGGCCGGTGTGAACAATGCAGTCAAAGTCATCCAAAAGG
GAAAGAAGTAAGAGGCCATATCTCATCTCGTCTAGTGGTTATCACGCATATGATGGAGCTTGTAGCACTGTATCATCATC
ATCATCATTGTAGCACTGTGATAACCACCGTTGTTGTTTTCAGTTTGTTGAGGAACACATTGTGCACTATGCATGGTAGT
CTGATTGTGCTAGCTAGCAAGCACTAAGCAGCTGTTTGGTCCGGACGTCCAGCCATTTTATTTGCTTTGTACTCGTATGC
TGTTGTTATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10209.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis