Browse Element(s) Details

Os.10209.3.S1_x_at

Description

gb:NM_185315.1
DB_XREF= gi:34897715
TID=Os.10209.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10209 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU082316(E3368),D41461(S3973) correspond to a region of the predicted gene.~hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) ESTs AU082316(E3368),D41461(S3973) correspond to a region of the predicted gene.~hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01500	10/11	IQ calmodulin-binding motif family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01460	Os.52642.1.S1_at	11/11	6	+	275727..281165	expressed protein
LOC_Os06g01470	Os.56352.1.S1_at	11/11	6	+	281348..283538	LOC569692 protein, putative, expressed
LOC_Os06g01480	Os.52815.1.S1_at	11/11	6	+	288313..293071	No apical meristem protein, expressed
LOC_Os06g01490	Os.4421.1.S1_at	11/11	6	+	296278..300787	Monocopper oxidase precursor, putative, expressed
LOC_Os06g01500	Os.10209.2.S1_at	11/11	6	+	304994..307707	IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01500	Os.10209.1.S1_x_at	10/11	6	+	304994..307707	IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01500	Os.10209.3.S1_x_at	10/11	6	+	304994..307707	IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01510	Os.9332.2.S1_x_at	1/11	6	+	311158..314242	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01520	NA	NA	6	+	315182..315772	hypothetical protein
LOC_Os06g01534	OsAffx.22848.4.S1_at	2/11	6	+	318704..324531	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01534	OsAffx.22848.3.S1_x_at	1/11	6	+	318704..324531	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01534	OsAffx.22848.4.S1_x_at	1/11	6	+	318704..324531	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01550	Os.43567.1.S1_x_at	7/11	6	+	326878..327657	transposon protein, putative, unclassified
LOC_Os06g01550	Os.38172.1.S1_x_at	3/11	6	+	326878..327657	transposon protein, putative, unclassified
LOC_Os06g01560	NA	NA	6	+	329733..335889	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0005516	molecular_function	calmodulin binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10209.3.S1_x_at--955--145	1	Chr06:306468..306492 (25 bp)	AGAAGGAACTGTCCCCACAGGATGC	LOC_Os06g01500
Os.10209.3.S1_x_at--1021--633	1	Chr06:306448..306472 (25 bp)	GATGCGGCATTGCTGATCCAGTTGA	LOC_Os06g01500
Os.10209.3.S1_x_at--96--57	1	Chr06:306433..306457 (25 bp)	ATCCAGTTGAACTACAGGGCTCACC	LOC_Os06g01500
Os.10209.3.S1_x_at--76--99	1	Chr06:306345..306369 (25 bp)	AGGAGATCAGGTCCCTCTTCTATAA	LOC_Os06g01500
Os.10209.3.S1_x_at--1113--249	1	Chr06:306322..306346 (25 bp)	AACATCTCTTACAGGCATCGCATGG	LOC_Os06g01500
Os.10209.3.S1_x_at--763--137	1	Chr06:306284..306308 (25 bp)	AGAGCGCCAAAGGTTCACTGAGAAA	LOC_Os06g01500
Os.10209.3.S1_x_at--353--143	1	Chr06:306264..306288 (25 bp)	AGAAAATCATCGTGCTGCTGCTCAC	LOC_Os06g01500
Os.10209.3.S1_x_at--802--911	1	Chr06:306249..306273 (25 bp)	TGCTGCTCACTGTAGATGCGCTTGA	LOC_Os06g01500
Os.10209.3.S1_x_at--280--61	1	NONE	ATGCGCTTGAGGGTCCTGACTACAT	NONE
Os.10209.3.S1_x_at--477--691	1	Chr06:305584..305608 (25 bp)	GTATGCTGGAGATTGTGGACCCTCA	LOC_Os06g01500
Os.10209.3.S1_x_at--5--665	1	Chr06:305538..305562 (25 bp)	GTTGACCCGCAGGAAGTTCGATCTT	LOC_Os06g01500

Target Sequence

AGAAGGAACTGTCCCCACAGGATGCGGCATTGCTGATCCAGTTGAACTACAGGGCTCACCTGGCACACCGTTCACAGGTG
CTTCGCTGCCTGCGTGATCTGGCTGTGGCTAAGGCCAAGCTCAAGGAGATCAGGTCCCTCTTCTATAACATCTCTTACAG
GCATCGCATGGCACATGACCATGAAGAGCGCCAAAGGTTCACTGAGAAAATCATCGTGCTGCTGCTCACTGTAGATGCGC
TTGAGGGTCCTGACTACATGGTGAGGACAGCAAAGAAGTCTATGCTTGATGAACTTGAAGGTATGCTGGAGATTGTGGAC
CCTCAGCCACCAGGGAAGCAGAGGTCGTTGACCCGCAGGAAGTTCGATCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis