Browse Element(s) Details


Os.52815.1.S1_at

Description gb:AK069423.1
DB_XREF= gi:32979447
TID=Os.52815.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019N04, full insert sequence.
FL= gb:AK069423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0148011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01440Os.20250.1.S1_at10/116+265683..271411Integral membrane protein, expressed
LOC_Os06g01450OsAffx.15214.1.S1_x_at11/116+270281..274436dehydration-responsive family protein, putative, expressed
LOC_Os06g01450Os.49839.1.S1_at11/116+270281..274436dehydration-responsive family protein, putative, expressed
LOC_Os06g01460Os.52642.1.S1_at11/116+275727..281165expressed protein
LOC_Os06g01470Os.56352.1.S1_at11/116+281348..283538LOC569692 protein, putative, expressed
LOC_Os06g01480Os.52815.1.S1_at11/116+288313..293071No apical meristem protein, expressed
LOC_Os06g01490Os.4421.1.S1_at11/116+296278..300787Monocopper oxidase precursor, putative, expressed
LOC_Os06g01500Os.10209.2.S1_at11/116+304994..307707IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01500Os.10209.1.S1_x_at10/116+304994..307707IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01500Os.10209.3.S1_x_at10/116+304994..307707IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01510Os.9332.2.S1_x_at1/116+311158..314242retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01520NANA6+315182..315772hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0010089biological_processxylem histogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52815.1.S1_at--331--911Chr06:288887..288911 (25 bp)
AGGCTGATCCCTTCTTTGACGACAT
LOC_Os06g01480
Os.52815.1.S1_at--827--611Chr06:288864..288888 (25 bp)
ATGCATGCAGTCGATCAAGCCACTA
LOC_Os06g01480
Os.52815.1.S1_at--600--2651Chr06:288848..288872 (25 bp)
AAGCCACTACCACTGACTGGAGAGT
LOC_Os06g01480
Os.52815.1.S1_at--359--8811Chr06:288811..288835 (25 bp)
TGTTGCCTCTCAGCTTAGCAATGAT
LOC_Os06g01480
Os.52815.1.S1_at--318--2211Chr06:288779..288803 (25 bp)
ACAAGCCTGCGGATCATTATACTGA
LOC_Os06g01480
Os.52815.1.S1_at--739--7531Chr06:288714..288738 (25 bp)
GTGGCAGCCGCCGATTATGCGTCCA
LOC_Os06g01480
Os.52815.1.S1_at--574--8851Chr06:288639..288663 (25 bp)
TGATCGATGCCCTGCACGCATTTAA
LOC_Os06g01480
Os.52815.1.S1_at--409--6391Chr06:288566..288590 (25 bp)
GATCGTATCGTATCAATTGGACAGA
LOC_Os06g01480
Os.52815.1.S1_at--968--5691Chr06:288497..288521 (25 bp)
GACTACTCTAGCTAGTACAACGTGT
LOC_Os06g01480
Os.52815.1.S1_at--748--51Chr06:288446..288470 (25 bp)
ATTGACCTTCGTACGTGTGTTTCTA
LOC_Os06g01480
Os.52815.1.S1_at--267--6471Chr06:288359..288383 (25 bp)
GATAAACCTCTTCTGCTATGTGATT
LOC_Os06g01480
Target Sequence 
AGGCTGATCCCTTCTTTGACGACATGCATGCAGTCGATCAAGCCACTACCACTGACTGGAGAGTTCTTGACAAGTTTGTT
GCCTCTCAGCTTAGCAATGATGCTACAAACAAGCCTGCGGATCATTATACTGATGAAGGAGACATTCTTCAGGTCAGTGA
CAAGCAGTAAGAGGTGGCAGCCGCCGATTATGCGTCCACATCAACGTCAAGCAGCCAAATTGATCCATGGAAGTGATCGA
TCCATGCATGATCGATGCCCTGCACGCATTTAATCAAGATATATTATATCTTATAGATAAAATTATCTCAATAATGATTA
TGATCGTATCGTATCAATTGGACAGATCGATACAAGTGGTTTGAGCTACATATTAATGCCGTGTAAATAAGACTACTCTA
GCTAGTACAACGTGTGGTGTTTGTGTGCTGCTTATATATATATTGACCTTCGTACGTGTGTTTCTATATGAAATAAGGTC
ATGGAGGACAAATTAAAAGCTTCATGAATATAATCGTGGTTTGTAATAGATAAACCTCTTCTGCTATGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis