Browse Element(s) Details


Os.52642.1.S1_at

Description gb:AK068490.1
DB_XREF= gi:32978508
TID=Os.52642.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155I22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155I22, full insert sequence.
FL= gb:AK068490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0146011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01420NANA6+250421..256376retrotransposon protein, putative, unclassified
LOC_Os06g01430NANA6+257208..260132retrotransposon protein, putative, unclassified
LOC_Os06g01440Os.20250.1.S1_at10/116+265683..271411Integral membrane protein, expressed
LOC_Os06g01450OsAffx.15214.1.S1_x_at11/116+270281..274436dehydration-responsive family protein, putative, expressed
LOC_Os06g01450Os.49839.1.S1_at11/116+270281..274436dehydration-responsive family protein, putative, expressed
LOC_Os06g01460Os.52642.1.S1_at11/116+275727..281165expressed protein
LOC_Os06g01470Os.56352.1.S1_at11/116+281348..283538LOC569692 protein, putative, expressed
LOC_Os06g01480Os.52815.1.S1_at11/116+288313..293071No apical meristem protein, expressed
LOC_Os06g01490Os.4421.1.S1_at11/116+296278..300787Monocopper oxidase precursor, putative, expressed
LOC_Os06g01500Os.10209.2.S1_at11/116+304994..307707IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01500Os.10209.1.S1_x_at10/116+304994..307707IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01500Os.10209.3.S1_x_at10/116+304994..307707IQ calmodulin-binding motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52642.1.S1_at--91--7191Chr06:276048..276072 (25 bp)
GTCTGTATTCATCTGTGAGAACTGT
LOC_Os06g01460
Os.52642.1.S1_at--532--5351Chr06:276005..276029 (25 bp)
GAAGAGGTTCCACAGCCTTGAGGTT
LOC_Os06g01460
Os.52642.1.S1_at--911--3371Chr06:275993..276017 (25 bp)
CAGCCTTGAGGTTTTGTATATGCAT
LOC_Os06g01460
Os.52642.1.S1_at--647--2211Chr06:275968..275992 (25 bp)
ACAAGACTCTTGTAGCAGCAAATTA
LOC_Os06g01460
Os.52642.1.S1_at--1072--5511Chr06:275895..275919 (25 bp)
GAAAATGTGAGATGTTGCCCATGAA
LOC_Os06g01460
Os.52642.1.S1_at--1104--3471Chr06:275852..275876 (25 bp)
CAGGATGTGTGAAGAACGGGCCAAA
LOC_Os06g01460
Os.52642.1.S1_at--1068--5431Chr06:275839..275863 (25 bp)
GAACGGGCCAAATGTATATACCATA
LOC_Os06g01460
Os.52642.1.S1_at--640--6791Chr06:275826..275850 (25 bp)
GTATATACCATACGGCCATTGGCAT
LOC_Os06g01460
Os.52642.1.S1_at--814--8431Chr06:275813..275837 (25 bp)
GGCCATTGGCATCTAGCCAAGCTAG
LOC_Os06g01460
Os.52642.1.S1_at--982--3711Chr06:275801..275825 (25 bp)
CTAGCCAAGCTAGTGATTTGAGATG
LOC_Os06g01460
Os.52642.1.S1_at--908--8891Chr06:275772..275796 (25 bp)
TGAGATGGTGGTGCACTTGTGTAAA
LOC_Os06g01460
Target Sequence 
GTCTGTATTCATCTGTGAGAACTGTTCAGTGGAGAAGTTGAAGGAAGAGGTTCCACAGCCTTGAGGTTTTGTATATGCAT
ACAAGACTCTTGTAGCAGCAAATTAGTAGTACGTAGGTGTTGAAGAAGAAGAATATATGAAATGAAATGAAATGAAAATG
TGAGATGTTGCCCATGAAATGGATGATTTGAATCAGCAGGATGTGTGAAGAACGGGCCAAATGTATATACCATACGGCCA
TTGGCATCTAGCCAAGCTAGTGATTTGAGATGAGAATGAGATGGTGGTGCACTTGTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis