Browse Element(s) Details

Os.4421.1.S1_at

Description

gb:AK102494.1
DB_XREF= gi:32987703
TID=Os.4421.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU082304(C61278),C93463(C50982) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone F24A6, Pollen-specific protein precursor like. (AL035396) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095A13, full insert sequence.
FL= gb:AK102494.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01490	11/11	Monocopper oxidase precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01440	Os.20250.1.S1_at	10/11	6	+	265683..271411	Integral membrane protein, expressed
LOC_Os06g01450	OsAffx.15214.1.S1_x_at	11/11	6	+	270281..274436	dehydration-responsive family protein, putative, expressed
LOC_Os06g01450	Os.49839.1.S1_at	11/11	6	+	270281..274436	dehydration-responsive family protein, putative, expressed
LOC_Os06g01460	Os.52642.1.S1_at	11/11	6	+	275727..281165	expressed protein
LOC_Os06g01470	Os.56352.1.S1_at	11/11	6	+	281348..283538	LOC569692 protein, putative, expressed
LOC_Os06g01480	Os.52815.1.S1_at	11/11	6	+	288313..293071	No apical meristem protein, expressed
LOC_Os06g01490	Os.4421.1.S1_at	11/11	6	+	296278..300787	Monocopper oxidase precursor, putative, expressed
LOC_Os06g01500	Os.10209.2.S1_at	11/11	6	+	304994..307707	IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01500	Os.10209.1.S1_x_at	10/11	6	+	304994..307707	IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01500	Os.10209.3.S1_x_at	10/11	6	+	304994..307707	IQ calmodulin-binding motif family protein, expressed
LOC_Os06g01510	Os.9332.2.S1_x_at	1/11	6	+	311158..314242	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01520	NA	NA	6	+	315182..315772	hypothetical protein
LOC_Os06g01534	OsAffx.22848.4.S1_at	2/11	6	+	318704..324531	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01534	OsAffx.22848.3.S1_x_at	1/11	6	+	318704..324531	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01534	OsAffx.22848.4.S1_x_at	1/11	6	+	318704..324531	retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification

GO id	Type	Name
GO:0009932	biological_process	cell tip growth
GO:0005886	cellular_component	plasma membrane
GO:0009505	cellular_component	cell wall (sensu Magnoliophyta)
GO:0031225	cellular_component	anchored to membrane
GO:0046658	cellular_component	anchored to plasma membrane
GO:0005507	molecular_function	copper ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4421.1.S1_at--311--299	1	Chr06:296943..296967 (25 bp)	AATGTCACTGAGATGGTGGCTCCAG	LOC_Os06g01490
Os.4421.1.S1_at--109--755	1	Chr06:296928..296952 (25 bp)	GTGGCTCCAGATAACATGCTCTACT	LOC_Os06g01490
Os.4421.1.S1_at--261--953	1	Chr06:296909..296933 (25 bp)	TCTACTGTGGCCTCCTCAAGGATAA	LOC_Os06g01490
Os.4421.1.S1_at--92--145	1	Chr06:296760..296784 (25 bp)	AGAAGCCTCATGGTTCATCAAGTTC	LOC_Os06g01490
Os.4421.1.S1_at--897--327	1	Chr06:296715..296739 (25 bp)	CAAACCGCTATTGGCTTGCAGTTGT	LOC_Os06g01490
Os.4421.1.S1_at--21--1075	1	Chr06:296700..296724 (25 bp)	TTGCAGTTGTGGTGTCTCTGGTAGC	LOC_Os06g01490
Os.4421.1.S1_at--1118--309	1	Chr06:296655..296679 (25 bp)	AATATTTTTCCTGTTAGTGCCCTGT	LOC_Os06g01490
Os.4421.1.S1_at--857--821	1	Chr06:296555..296579 (25 bp)	GGAATACTGTCATTGTGCATCGGCA	LOC_Os06g01490
Os.4421.1.S1_at--967--889	1	Chr06:296488..296512 (25 bp)	TGAGTCTGTGTGTCGGCACCTGCAA	LOC_Os06g01490
Os.4421.1.S1_at--302--111	1	Chr06:296448..296472 (25 bp)	AGTGTGTTTTCTCGCATCGATCGAC	LOC_Os06g01490
Os.4421.1.S1_at--602--629	1	Chr06:296400..296424 (25 bp)	GATGATTGTCATTCCATCTCAATTT	LOC_Os06g01490

Target Sequence

AATGTCACTGAGATGGTGGCTCCAGATAACATGCTCTACTGTGGCCTCCTCAAGGATAAACAGAAGGCTCAGAAGCCTCA
TGGTTCATCAAGTTCATCATCCTCTGCTGCATCACCAAACCGCTATTGGCTTGCAGTTGTGGTGTCTCTGGTAGCGGCGG
TGTTCGTCCAATGAAAATATTTTTCCTGTTAGTGCCCTGTTGGCTGTTGTTTGCAAATTAGGAAACTGACAGAATTCGGG
TAGGTCGAAAAATTTGTAGGTTCCATGATTCGTGTGGAATACTGTCATTGTGCATCGGCAAAGTTTGTCGGAATTTAACA
GAGATTGTGTAAACCATTGCATTGAGTCTGTGTGTCGGCACCTGCAAGGAGTGGTGCCTGAGAGTGTGTTTTCTCGCATC
GATCGACTTATTAGTAGAGATCTGGATATTGATGATTGTCATTCCATCTCAATTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis