Browse Element(s) Details

Os.8578.1.S1_at

Description

gb:AK103757.1
DB_XREF= gi:32988966
TID=Os.8578.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8578 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033143E17, full insert sequence.
FL= gb:AK103757.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01350	11/11	Transferase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01304	Os.11259.2.S1_at	11/11	6	+	184697..190449	Spotted leaf protein 11, putative, expressed
LOC_Os06g01304	Os.11259.1.S1_a_at	11/11	6	+	184697..190449	Spotted leaf protein 11, putative, expressed
LOC_Os06g01320	OsAffx.15212.1.S1_at	11/11	6	+	194018..207583	'chromo' domain containing protein, expressed
LOC_Os06g01320	Os.18567.1.S1_x_at	11/11	6	+	194018..207583	'chromo' domain containing protein, expressed
LOC_Os06g01320	Os.52692.1.S1_x_at	10/11	6	+	194018..207583	'chromo' domain containing protein, expressed
LOC_Os06g01340	OsAffx.27416.1.S1_at	11/11	6	+	208204..209107	CCT motif family protein
LOC_Os06g01350	Os.8578.1.S1_at	11/11	6	+	212020..213695	Transferase family protein, expressed
LOC_Os06g01350	OsAffx.28276.1.S1_x_at	1/11	6	+	212020..213695	Transferase family protein, expressed
LOC_Os06g01360	Os.11622.1.S1_at	10/11	6	+	214046..217208	Homogentisate 1,2-dioxygenase, putative, expressed
LOC_Os06g01370	Os.14023.2.S1_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.2.S1_x_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.1.S1_x_at	11/11	6	+	218460..220117	expressed protein
LOC_Os06g01370	Os.14023.1.S1_at	10/11	6	+	218460..220117	expressed protein
LOC_Os06g01390	Os.9192.1.S1_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	Os.9192.2.S1_x_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	Os.9192.2.S1_at	11/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01390	OsAffx.28164.2.S1_at	1/11	6	+	226847..231808	Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os06g01400	Os.52272.1.S1_at	11/11	6	+	232787..243624	glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400	Os.17279.1.S1_s_at	11/11	6	+	232787..243624	glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400	Os.17279.1.S1_at	11/11	6	+	232787..243624	glycyl-tRNA synthetase beta subunit family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016740	molecular_function	transferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.8578.1.S1_at--245--1017	1	Chr06:213160..213184 (25 bp)	TATACACGGCGAGGTACTTCGACCC	LOC_Os06g01350
Os.8578.1.S1_at--1159--1065	1	Chr06:213459..213483 (25 bp)	TTCCTGCCTTAATTAGTGCCTGCCT	LOC_Os06g01350
Os.8578.1.S1_at--160--919	1	Chr06:213475..213499 (25 bp)	TGCCTGCCTTTTCTTCCAAAATTAA	LOC_Os06g01350
Os.8578.1.S1_at--463--267	1	Chr06:213513..213537 (25 bp)	AAGCTTTAAGCTTTTCCTTCCGATG	LOC_Os06g01350
Os.8578.1.S1_at--877--923	1	Chr06:213527..213551 (25 bp)	TCCTTCCGATGATATTGTTTCCCGT	LOC_Os06g01350
Os.8578.1.S1_at--193--73	1	Chr06:213535..213559 (25 bp)	ATGATATTGTTTCCCGTCTCTGTCT	LOC_Os06g01350
Os.8578.1.S1_at--396--947	1	Chr06:213553..213577 (25 bp)	TCTGTCTCAGGTTTTGGTTTCCTTA	LOC_Os06g01350
Os.8578.1.S1_at--426--685	1	Chr06:213569..213593 (25 bp)	GTTTCCTTAGTGTTTGTTTGCTTGC	LOC_Os06g01350
Os.8578.1.S1_at--345--1073	1	Chr06:213586..213610 (25 bp)	TTGCTTGCTTGATTGATAATCCAGC	LOC_Os06g01350
Os.8578.1.S1_at--1079--711	1	Chr06:213644..213668 (25 bp)	GTCATGACATCATTCCAGTGAGGAT	LOC_Os06g01350
Os.8578.1.S1_at--300--99	1	Chr06:213664..213688 (25 bp)	AGGATGCAATGCACAACACCTTCTT	LOC_Os06g01350

Target Sequence

TATACACGGCGAGGTACTTCGACCCGTCGGGGGTGATGATGGGGAGCTCGCCGCGGTTCNGACATNGTACGGCTGCGACT
TTGGGTGGGGGAAGGCGCTGGCGGCGCGGAGCGGCAAGGCCAACAAGATGGACGGCAAGGCGTCGCTGTACCCGGGGCGG
GAGGGCGGAGGAAGCATAGATGCGGAGGTGGTGCTCACTCCACACCACATGGCGGCGCTGGACGACGACCACGAGCTGTG
GGCCGCCGTCACGCCGCTACTGCTCAACAACAACAAACCTTGAAGCTTTTCTTCCTCCTCCTTCCTGCCTTAATTAGTGC
CTGCCTTTTCTTCCAAAATTAAATAATAAAATAAGAAGCTTTAAGCTTTTCCTTCCGATGATATTGTTTCCCGTCTCTGT
CTCAGGTTTTGGTTTCCTTAGTGTTTGTTTGCTTGCTTGATTGATAATCCAGCATCAACAAACAAAGTAAAGATATATCT
ATTCATGTCATGACATCATTCCAGTGAGGATGCAATGCACAACACCTTCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis