Browse Element(s) Details


OsAffx.28276.1.S1_x_at

Description tigr:9635.m00429
TID=OsAffx.28276.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0497011/11Transferase family protein
LOC_Os11g139702/11Transferase family protein
LOC_Os06g013501/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04900OsAffx.22499.1.S1_at11/117+2160944..2165422NB-ARC domain containing protein
LOC_Os07g04910Os.27992.1.S1_at11/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04910OsAffx.2974.1.S1_s_at1/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04930Os.7767.1.S1_at11/117+2174869..2175940expressed protein
LOC_Os07g04940NANA7+2177972..2179438hypothetical protein
LOC_Os07g04950NANA7+2180140..2180943expressed protein
LOC_Os07g04960Os.36708.1.S1_at11/117+2182550..2183296expressed protein
LOC_Os07g04970OsAffx.28276.1.S1_x_at11/117+2185812..2187239Transferase family protein
LOC_Os07g04970OsAffx.7105.1.S1_x_at2/117+2185812..2187239Transferase family protein
LOC_Os07g04980OsAffx.5213.2.S1_at11/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_x_at10/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_at8/117+2188976..2191512hypothetical protein
LOC_Os07g04990Os.8112.1.S1_at11/117+2192109..2195348oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05000Os.11674.1.S1_at11/117+2195873..2199716oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05010Os.44516.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010Os.15089.1.S1_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_at10/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05020OsAffx.22498.1.S1_at9/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55138.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.2.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.20707.2.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55476.1.S1_at1/117+2210901..2213778expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28276.1.S1_x_at--737--6692Chr06:212864..212887 (24 bp)
GTTCCAGGCGCTGAGCTCGCTGCTA
LOC_Os06g01350
OsAffx.28276.1.S1_x_at--1113--1571Chr07:2186363..2186387 (25 bp)
AGCTCGCTGCTATGGCGGTGCGTCA
LOC_Os07g04970
OsAffx.28276.1.S1_x_at--353--7751Chr07:2186304..2186328 (25 bp)
GGTGTTCCGCGCGTCGGTCAACAGC
LOC_Os07g04970
OsAffx.28276.1.S1_x_at--1014--4131Chr07:2186260..2186284 (25 bp)
CGCTGCCACCGGAGTACTTCGGGAA
LOC_Os07g04970
OsAffx.28276.1.S1_x_at--221--6091Chr07:2186249..2186273 (25 bp)
GAGTACTTCGGGAACAGCATCCTCC
LOC_Os07g04970
OsAffx.28276.1.S1_x_at--61--8731Chr07:2186089..2186113 (25 bp)
TGTCGGCGTTCAGGCTGTTCGACGC
LOC_Os07g04970
OsAffx.28276.1.S1_x_at--672--1831Chr07:2186068..2186092 (25 bp)
ACGCGAGCGGCGTGTTCGTGAGCAG
LOC_Os07g04970
OsAffx.28276.1.S1_x_at--89--8811Chr07:2186056..2186080 (25 bp)
TGTTCGTGAGCAGCTCGCCGCGGTT
LOC_Os07g04970
OsAffx.28276.1.S1_x_at--335--9332Chr11:7741662..7741686 (25 bp)
TCGCCGCGGTTCGACATGTACGGGT
LOC_Os11g13970
OsAffx.28276.1.S1_x_at--152--7892Chr11:7741655..7741679 (25 bp)
GGTTCGACATGTACGGGTGCGACTT
LOC_Os11g13970
OsAffx.28276.1.S1_x_at--577--9931Chr07:2185964..2185988 (25 bp)
TACGACGGGAAGGTGTCGCTGTTCC
LOC_Os07g04970
Target Sequence 
GTTCCAGGCGCTGAGCTCGCTGCTATGGCGGTGCGTCACCCGCGCGCGGCGGCTGGCGCCGGGCCGGGAGGTGGTGTTCC
GCGCGTCGGTCAACAGCCGCGGCCGCCTCCGCCCGCCGCTGCCACCGGAGTACTTCGGGAACAGCATCCTCCCCGCGTCG
ACGGAGGCGGTGCCGGCGTCGGAGCTCCTGGCGCGCGGGCACGGGTGGGCGGCCGCCGCCGTGGGCCGCGCGGTGGCCGC
GCACACCGACGAGCGCATCCGCGCGCGCTCGGCGGCGGCGCCGTCGGTGTCGGCGTTCAGGCTGTTCGACGCGAGCGGCG
TGTTCGTGAGCAGCTCGCCGCGGTTCGACATGTACGGGTGCGACTTCGGGTGGGGGAAGGCGGTGGCGGCGAGGAGCGGC
AAGGGGAACAAGTACGACGGGAAGGTGTCGCTGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28276.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis