Browse Element(s) Details


Os.8112.1.S1_at

Description gb:AK064848.1
DB_XREF= gi:32974866
TID=Os.8112.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative oxidoreductase (OJ1351_C05.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000G23, full insert sequence.
FL= gb:AK060737.1 gb:AK064848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0499011/11oxidoreductase, aldo/keto reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04910Os.27992.1.S1_at11/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04910OsAffx.2974.1.S1_s_at1/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04930Os.7767.1.S1_at11/117+2174869..2175940expressed protein
LOC_Os07g04940NANA7+2177972..2179438hypothetical protein
LOC_Os07g04950NANA7+2180140..2180943expressed protein
LOC_Os07g04960Os.36708.1.S1_at11/117+2182550..2183296expressed protein
LOC_Os07g04970OsAffx.28276.1.S1_x_at11/117+2185812..2187239Transferase family protein
LOC_Os07g04970OsAffx.7105.1.S1_x_at2/117+2185812..2187239Transferase family protein
LOC_Os07g04980OsAffx.5213.2.S1_at11/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_x_at10/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_at8/117+2188976..2191512hypothetical protein
LOC_Os07g04990Os.8112.1.S1_at11/117+2192109..2195348oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05000Os.11674.1.S1_at11/117+2195873..2199716oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05010Os.44516.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010Os.15089.1.S1_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_at10/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05020OsAffx.22498.1.S1_at9/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55138.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.2.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.20707.2.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55476.1.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05030OsAffx.28277.1.S1_at10/117+2216587..2217757hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8112.1.S1_at--863--10851Chr07:2194135..2194159 (25 bp)
TTGGCATCACCCTGATTGCTTATTC
LOC_Os07g04990
Os.8112.1.S1_at--1103--10391Chr07:2194154..2194176 (23 bp)
TTATTCCCCAATAGCCCAAGGTGTT
LOC_Os07g04990
Os.8112.1.S1_at--16--311Chr07:2194164..2194480 (25 bp)
ATAGCCCAAGGTGTTCTGTCAGGAA
LOC_Os07g04990
Os.8112.1.S1_at--693--9951Chr07:2194503..2194527 (25 bp)
TACCGGTCCTCGAGCAAACACATAT
LOC_Os07g04990
Os.8112.1.S1_at--123--5951Chr07:2194514..2194538 (25 bp)
GAGCAAACACATATACCCCTGAGTT
LOC_Os07g04990
Os.8112.1.S1_at--1039--2691Chr07:2194679..2194702 (24 bp)
AAGCTTCAACCACTCATGAACAGGA
LOC_Os07g04990
Os.8112.1.S1_at--1047--2591Chr07:2194880..2194900 (21 bp)
AACCCAGGTTTCACTGAACTGGCTG
LOC_Os07g04990
Os.8112.1.S1_at--1136--5451Chr07:2194891..2194915 (25 bp)
GAACTGGCTGACATGCCAAGGCAAT
LOC_Os07g04990
Os.8112.1.S1_at--364--2931Chr07:2194908..2194932 (25 bp)
AAGGCAATGTGGTGCCAATCCCCGG
LOC_Os07g04990
Os.8112.1.S1_at--394--9171Chr07:2195046..2195070 (25 bp)
TGCCCATCGAGGAGTCATAGACATG
LOC_Os07g04990
Os.8112.1.S1_at--741--5591Chr07:2195184..2195208 (25 bp)
GAAATTTCTGCCTGCATGAATAGAA
LOC_Os07g04990
Target Sequence 
TTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAGGTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACC
GGTCCTCGAGCAAACACATATACCCCTGAGTTCCTCACCAAGCTTCAACCACTCATGAACAGGATCAAGGAGATTGGAGA
AAGCTATGGGAAGAACCCAACCCAGGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAGCCA
AGAACGCCGGCCAGGCGCAGGAGTTCGCCGGCGCGCTCGGCTGGAGCCTCACCGGCGACGAGGTCGAAGAGTTGCGGTCT
NTGGCACGCGAGATCAAGGGCATCAAGATGCCCATCGAGGAGTCATAGACATGTAAAAACTGAAGAAGTTTTTCATGTAT
ATGATAGGAGATGTGTATTGATTGTACCATGCAATAGTAAACATTTTACGGCGATAAAATGTGTAGAAGGTGTAGAAAAT
GAGTCAGAAATTTCTGCCTGCATGAATAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis