Browse Element(s) Details


OsAffx.5213.1.S1_x_at

Description gb:NM_186259.1
DB_XREF= gi:34899603
GEN=OJ1351_C05.24
TID=OsAffx.5213.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome7, P0022B05.2 (OJ1351_C05.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0498010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04900OsAffx.22499.1.S1_at11/117+2160944..2165422NB-ARC domain containing protein
LOC_Os07g04910Os.27992.1.S1_at11/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04910OsAffx.2974.1.S1_s_at1/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04930Os.7767.1.S1_at11/117+2174869..2175940expressed protein
LOC_Os07g04940NANA7+2177972..2179438hypothetical protein
LOC_Os07g04950NANA7+2180140..2180943expressed protein
LOC_Os07g04960Os.36708.1.S1_at11/117+2182550..2183296expressed protein
LOC_Os07g04970OsAffx.28276.1.S1_x_at11/117+2185812..2187239Transferase family protein
LOC_Os07g04970OsAffx.7105.1.S1_x_at2/117+2185812..2187239Transferase family protein
LOC_Os07g04980OsAffx.5213.2.S1_at11/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_x_at10/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_at8/117+2188976..2191512hypothetical protein
LOC_Os07g04990Os.8112.1.S1_at11/117+2192109..2195348oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05000Os.11674.1.S1_at11/117+2195873..2199716oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05010Os.44516.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010Os.15089.1.S1_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_at10/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05020OsAffx.22498.1.S1_at9/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55138.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.2.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.20707.2.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55476.1.S1_at1/117+2210901..2213778expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5213.1.S1_x_at--137--8251Chr07:2189461..2189485 (25 bp)
GGCACCAGCACTTGAATTATTAGAT
LOC_Os07g04980
OsAffx.5213.1.S1_x_at--652--1711Chr07:2189493..2189517 (25 bp)
ACCACTTTTCTGATGGTTCAGCTCA
LOC_Os07g04980
OsAffx.5213.1.S1_x_at--860--1471Chr07:2189542..2189566 (25 bp)
AGCACCTAAGCTGGAGATTCTCGGG
LOC_Os07g04980
OsAffx.5213.1.S1_x_at--39--411Chr07:2189586..2189610 (25 bp)
ATCAGAGCTCTGTCAATTTTGGCAA
LOC_Os07g04980
OsAffx.5213.1.S1_x_at--222--6271Chr07:2189611..2189635 (25 bp)
GATGTCGTATCTCAAAGGGCTGTTC
LOC_Os07g04980
OsAffx.5213.1.S1_x_at--159--1091Chr07:2189626..2189650 (25 bp)
AGGGCTGTTCATCGCATATTTCTAT
LOC_Os07g04980
OsAffx.5213.1.S1_x_at--33--6611Chr07:2189678..2189702 (25 bp)
GATTGTCTAAGGCTCTTGCAGCACT
LOC_Os07g04980
OsAffx.5213.1.S1_x_at--1024--1731NONE
ACCTACTTTCCATTTTGTGGATCGG
NONE
OsAffx.5213.1.S1_x_at--276--6611Chr07:2191216..2191240 (25 bp)
GATTGTGTTTGTGATCTTCCACCAA
LOC_Os07g04980
OsAffx.5213.1.S1_x_at--417--951Chr07:2191253..2191277 (25 bp)
AGGAACTTGTGTTGAACTCCCTTCG
LOC_Os07g04980
OsAffx.5213.1.S1_x_at--586--1311Chr07:2191421..2191445 (25 bp)
AGATGTTACTGAGCTTCTCCAGGCC
LOC_Os07g04980
Target Sequence 
GGCACCAGCACTTGAATTATTAGATGTTAATTACCACTTTTCTGATGGTTCAGCTCAGAGTCAACCCGTCGCCAACATCT
CAGCACCTAAGCTGGAGATTCTCGGGTGGAGTACTACTAATTTAGATCAGAGCTCTGTCAATTTTGGCAAGATGTCGTAT
CTCAAAGGGCTGTTCATCGCATATTTCTATGTGTATGGAGAAGAGGATCGCAATCACGATTGTCTAAGGCTCTTGCAGCA
CTTTCAGTTTGATGCCATCCCCAGACTTTCCATCCTACTTACCTACTTTCCATTTTGTGGATCGGATTGTGTTTGTGATC
TTCCACCAAACTGGACATCCGAGGAACTTGTGTTGAACTCCCTTCGTGAAGTGCAAATCACTAACCTGAGAGGAACTGAG
AACGAATTTGCTGTTGTGGAGCGGCTATTCAGTTGGGCAGCAGTGCTGAAACAGATGACAATAAATTTCCATAACTCAAT
CACCGTGAGCACTGCAAGAGAGTTGTGCGAGATGTTACTGAGCTTCTCCAGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5213.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis