Browse Element(s) Details


OsAffx.22498.1.S1_at

Description tigr:9635.m00434
TID=OsAffx.22498.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g050209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04970OsAffx.28276.1.S1_x_at11/117+2185812..2187239Transferase family protein
LOC_Os07g04970OsAffx.7105.1.S1_x_at2/117+2185812..2187239Transferase family protein
LOC_Os07g04980OsAffx.5213.2.S1_at11/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_x_at10/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_at8/117+2188976..2191512hypothetical protein
LOC_Os07g04990Os.8112.1.S1_at11/117+2192109..2195348oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05000Os.11674.1.S1_at11/117+2195873..2199716oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05010Os.44516.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010Os.15089.1.S1_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_at10/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05020OsAffx.22498.1.S1_at9/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55138.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.2.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.20707.2.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55476.1.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05030OsAffx.28277.1.S1_at10/117+2216587..2217757hypothetical protein
LOC_Os07g05040Os.5363.1.S1_at11/117+2221229..2223216cadmium-induced protein, putative, expressed
LOC_Os07g05050Os.38341.1.S1_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05050Os.38341.1.S1_x_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05060Os.35959.1.S1_at10/117+2230274..2232730expressed protein
LOC_Os07g05070OsAffx.28278.1.S1_at10/117+2233716..2234318hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22498.1.S1_at--1037--6412Chr07:5920787..5920811 (25 bp)
GATCTCTAAGATCGCTGCGCGACTG
NONE
OsAffx.22498.1.S1_at--1040--4132Chr07:5920799..5920823 (25 bp)
CGCTGCGCGACTGGATAGGGTACTT
NONE
OsAffx.22498.1.S1_at--334--5093Chr07:5920891..5920915 (25 bp)
GCACCCGGAACGGTGACGACGTCGA
NONE
OsAffx.22498.1.S1_at--32--3951NONE
CGGCATGTTAAGGTTATCGAATATT
NONE
OsAffx.22498.1.S1_at--1031--831Chr07:2212969..2212993 (25 bp)
ATGGAGATCTTCCAGTCCATACAGA
LOC_Os07g05020
OsAffx.22498.1.S1_at--706--1451Chr07:2212991..2213015 (25 bp)
AGAAGCATCTTCAGGTTAGCATGGA
LOC_Os07g05020
OsAffx.22498.1.S1_at--1128--471Chr07:2213028..2213052 (25 bp)
ATCTGTCAAACCAGGAGGGCCTTTG
LOC_Os07g05020
OsAffx.22498.1.S1_at--1034--5571NONE
GAAATGCTTCTGTCAGGTCCAAGTA
NONE
OsAffx.22498.1.S1_at--1084--7251Chr07:2213695..2213719 (25 bp)
GTCCAAGTACAGATACCGCGTTTCT
LOC_Os07g05020
OsAffx.22498.1.S1_at--344--1271Chr07:2213705..2213729 (25 bp)
AGATACCGCGTTTCTACGGATCGAA
LOC_Os07g05020
OsAffx.22498.1.S1_at--424--9531Chr07:2213717..2213741 (25 bp)
TCTACGGATCGAAGCAAGCATTGAA
LOC_Os07g05020
Target Sequence 
GATCTCTAAGATCGCTGCGCGACTGGATAGGGTACTTGGGGGTAAATGGAGAGGAGGTCGAGGTGAAGCTGATGGCGTGG
TGGCTCGGCCTACAACGGTCCACTGCACCCGGAACGGTGACGACGTCGAGGCGGCGACGCGCAGAGCGCGCTCCAAGGCC
GGCGATGACACGATGGCGTTCCCGTCGATCCGCTGCACAAGAGAGGATGGAATCAAAATGAAAAATCTTCGGCATGTTAA
GGTTATCGAATATTCAGATGTTAACATGGAGATCTTCCAGTCCATACAGAAGCATCTTCAGGTTAGCATGGAGTTTGTGA
TGAAATCTGTCAAACCAGGAGGGCCTTTGGCTCTTGTTATCAGAAATTCAGAATGGACAGTGACAAAGAGCATCTTGAAT
TTGCTGAAATGCTTCTGTCAGGTCCAAGTACAGATACCGCGTTTCTACGGATCGAAGCAAGCATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis