Browse Element(s) Details


OsAffx.7105.1.S1_x_at

Description tigr:9639.m01292
TID=OsAffx.7105.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1397011/11Transferase family protein
LOC_Os07g049702/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13950NANA11+7716612..7717241hypothetical protein
LOC_Os11g13960OsAffx.30226.2.S1_s_at5/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.442.1.S1_x_at3/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.24587.1.S1_x_at2/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.4.S1_x_at2/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.2.S1_x_at2/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.5.S1_at1/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.4.S1_at1/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.19052.1.S1_at1/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13970OsAffx.7105.1.S1_x_at11/1111+7741441..7742877Transferase family protein
LOC_Os11g13970OsAffx.7105.1.S1_at11/1111+7741441..7742877Transferase family protein
LOC_Os11g13970OsAffx.28276.1.S1_x_at2/1111+7741441..7742877Transferase family protein
LOC_Os11g13980Os.55330.1.S1_at11/1111+7745843..7746586Hsp20/alpha crystallin family protein, expressed
LOC_Os11g13980Os.55330.1.S1_x_at11/1111+7745843..7746586Hsp20/alpha crystallin family protein, expressed
LOC_Os11g13990OsAffx.30967.1.S1_at11/1111+7748786..7755776ATPase, AAA family protein
LOC_Os11g13990Os.51398.1.S1_x_at11/1111+7748786..7755776ATPase, AAA family protein
LOC_Os11g14000Os.54533.1.S1_at10/1111+7766615..7767947ANTH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7105.1.S1_x_at--1119--9791Chr11:7742003..7742027 (25 bp)
TAACCTCGCTGCTATGGCGGTGCAT
LOC_Os11g13970
OsAffx.7105.1.S1_x_at--249--3711Chr11:7741992..7742016 (25 bp)
CTATGGCGGTGCATCACGCGCGCCA
LOC_Os11g13970
OsAffx.7105.1.S1_x_at--510--371Chr11:7741980..7742004 (25 bp)
ATCACGCGCGCCAGGTGTTCGTCGC
LOC_Os11g13970
OsAffx.7105.1.S1_x_at--1115--1911Chr11:7741944..7741968 (25 bp)
ACGGTGTGCCGCGTGGCCATCAACA
LOC_Os11g13970
OsAffx.7105.1.S1_x_at--718--9871Chr11:7741884..7741908 (25 bp)
TACTTCGGGAACAGCGTGTACGCCA
LOC_Os11g13970
OsAffx.7105.1.S1_x_at--1036--5491Chr11:7741876..7741900 (25 bp)
GAACAGCGTGTACGCCATCGGCACG
LOC_Os11g13970
OsAffx.7105.1.S1_x_at--230--7291Chr11:7741839..7741863 (25 bp)
GTGCGCGCGTCGGAGCTCGTGCAGG
LOC_Os11g13970
OsAffx.7105.1.S1_x_at--424--8751Chr11:7741709..7741733 (25 bp)
TGTACACGGCGAGGTGCTTCGACGC
LOC_Os11g13970
OsAffx.7105.1.S1_x_at--336--9332Chr11:7741662..7741686 (25 bp)
TCGCCGCGGTTCGACATGTACGGGT
LOC_Os11g13970
OsAffx.7105.1.S1_x_at--151--7892Chr11:7741655..7741679 (25 bp)
GGTTCGACATGTACGGGTGCGACTT
LOC_Os11g13970
OsAffx.7105.1.S1_x_at--757--3191Chr11:7741597..7741621 (25 bp)
GAAGGCGAACAAGTCCGACGGGAAG
LOC_Os11g13970
Target Sequence 
TAACCTCGCTGCTATGGCGGTGCATCACGCGCGCCAGGTGTTCGTCGCCGGACCAGGAGACGGTGTGCCGCGTGGCCATC
AACAACCGCGGGCGCCTCCGCCCGCCGCTGCCGAGGGAGTACTTCGGGAACAGCGTGTACGCCATCGGCACGGAGGCGTC
GCCGGTGCGCGCGTCGGAGCTCGTGCAGGAGCGCGGGCACGGGTGGGCGGCGGCGGCGGTGGGGCGCGCCGTGGCGGCGC
ACACGGACGCGGGCATCCGGGCGCGCGTGGCGGCGTGGGGGGCGAGGCCGACGGTGTACACGGCGAGGTGCTTCGACGCG
TCGGGGGTGATGGTGGGGAGCTCGCCGCGGTTCGACATGTACGGGTGCGACTTCGGGTGGGGGAAGGCGGTGGCGGCGCG
GAGCGGGAAGGCGAACAAGTCCGACGGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7105.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis