Browse Element(s) Details


Os.54533.1.S1_at

Description gb:AK105539.1
DB_XREF= gi:32990748
TID=Os.54533.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-H08, full insert sequence.
FL= gb:AK105539.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1400010/11ANTH domain containing protein, expressed
LOC_Os08g053401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13970OsAffx.7105.1.S1_x_at11/1111+7741441..7742877Transferase family protein
LOC_Os11g13970OsAffx.7105.1.S1_at11/1111+7741441..7742877Transferase family protein
LOC_Os11g13970OsAffx.28276.1.S1_x_at2/1111+7741441..7742877Transferase family protein
LOC_Os11g13980Os.55330.1.S1_at11/1111+7745843..7746586Hsp20/alpha crystallin family protein, expressed
LOC_Os11g13980Os.55330.1.S1_x_at11/1111+7745843..7746586Hsp20/alpha crystallin family protein, expressed
LOC_Os11g13990OsAffx.30967.1.S1_at11/1111+7748786..7755776ATPase, AAA family protein
LOC_Os11g13990Os.51398.1.S1_x_at11/1111+7748786..7755776ATPase, AAA family protein
LOC_Os11g14000Os.54533.1.S1_at10/1111+7766615..7767947ANTH domain containing protein, expressed
LOC_Os11g14010Os.17018.1.S1_at11/1111+7772111..7779644PHD finger protein, putative, expressed
LOC_Os11g14020OsAffx.30968.1.S1_at11/1111+7781949..7783802transposon protein, putative, unclassified
LOC_Os11g14030OsAffx.18841.1.S1_at11/1111+7784619..7785586hypothetical protein
LOC_Os11g14040OsAffx.18842.1.S1_at11/1111+7787757..7789994Glutathione S-transferase zeta class, putative
LOC_Os11g14050OsAffx.30969.1.S1_at11/1111+7792536..7797853Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54533.1.S1_at--354--9451Chr11:7767190..7767214 (25 bp)
TCGGCATTGTGCTCCGCGAGAGCTT
LOC_Os11g14000
Os.54533.1.S1_at--1103--1351Chr11:7767172..7767196 (25 bp)
AGAGCTTCAAGGTCTACGACGCCTT
LOC_Os11g14000
Os.54533.1.S1_at--255--7191Chr11:7767072..7767096 (25 bp)
GTCGGCCCACGAGATCCTCAAGAAG
LOC_Os11g14000
Os.54533.1.S1_at--537--3211Chr11:7767024..7767048 (25 bp)
CAAGGAGTTCTACCACAAGTGCAAG
LOC_Os11g14000
Os.54533.1.S1_at--186--9411Chr11:7766959..7766983 (25 bp)
TCGTCAGGGTCGTCACGTCGGCAAT
LOC_Os11g14000
Os.54533.1.S1_at--984--2611Chr11:7766824..7766848 (25 bp)
AACCGTTTGCCACCAAGCTGGAGAC
LOC_Os11g14000
Os.54533.1.S1_at--741--4611Chr11:7766743..7766767 (25 bp)
GCGACCATTCGTTGCAGGGCGTGCA
LOC_Os11g14000
Os.54533.1.S1_at--187--3471Chr11:7766729..7766753 (25 bp)
CAGGGCGTGCAGAGTAGCTATCTAT
LOC_Os11g14000
Os.54533.1.S1_at--805--4871Chr11:7766713..7766737 (25 bp)
GCTATCTATAGCTAGCTTTGCTAGT
LOC_Os11g14000
Os.54533.1.S1_at--188--1211Chr11:7766691..7766715 (25 bp)
AGTTTGTAGAAGCTGATCATCGTCA
LOC_Os11g14000
Os.54533.1.S1_at--79--4932Chr08:2802475..2802494 (20 bp)
GCTTGTTAATTAATTTTCCTCTCTC
LOC_Os08g05340
Target Sequence 
TCGGCATTGTGCTCCGCGAGAGCTTCAAGGTCTACGACGCCTTCAAGGACGGCCTCGACGCGCTCCTCCGTTCTCTCGCC
GCCGCCGGCGGCGGCGGCAAGGCGTCGAGGGCGTCGTCGTCGGCCCACGAGATCCTCAAGAAGGCGCGCGCCCAGACGCC
GGAGCTCAAGGAGTTCTACCACAAGTGCAAGAAGAGCAGCAATGTCAGCAGCAAGAGCCTCGACTACCCCGTCGTCAGGG
TCGTCACGTCGGCAATGGAGCTCGTCATGCCGCCGCCGGTCACCGACGACGAAGACGACGACGGCGGCGGCGCCGCCACC
ACCGAAGAGGCGGCGGGGGTGGCGGCGCAGGAGGCGAGCCATCCCCAACCGTTTGCCACCAAGCTGGAGACGACGATCAG
CACGGTGTGGGTGGAGTTCGACGACGGCGACGGCGACGGCGGCGGCGGCGACCATTCGTTGCAGGGCGTGCAGAGTAGCT
ATCTATAGCTAGCTTTGCTAGTTTGTAGAAGCTGATCATCGTCATGAAATGCAACATGTTTGGGAGTATATTAATTTTGA
GGGCAGGATTATATTGCTTGTTAATTAATTTTCCTCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis