Browse Element(s) Details


OsAffx.30969.1.S1_at

Description tigr:9639.m01301
TID=OsAffx.30969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1405011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14000Os.54533.1.S1_at10/1111+7766615..7767947ANTH domain containing protein, expressed
LOC_Os11g14010Os.17018.1.S1_at11/1111+7772111..7779644PHD finger protein, putative, expressed
LOC_Os11g14020OsAffx.30968.1.S1_at11/1111+7781949..7783802transposon protein, putative, unclassified
LOC_Os11g14030OsAffx.18841.1.S1_at11/1111+7784619..7785586hypothetical protein
LOC_Os11g14040OsAffx.18842.1.S1_at11/1111+7787757..7789994Glutathione S-transferase zeta class, putative
LOC_Os11g14050OsAffx.30969.1.S1_at11/1111+7792536..7797853Protein kinase domain containing protein, expressed
LOC_Os11g14060Os.50314.1.S1_at8/1111+7799964..7801520expressed protein
LOC_Os11g14060Os.29856.2.S1_x_at4/1111+7799964..7801520expressed protein
LOC_Os11g14070Os.51705.1.S1_at11/1111+7813470..7819529expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30969.1.S1_at--37--9311Chr11:7797188..7797212 (25 bp)
TCTCCAAGCCTCTGAACCAGGATGG
LOC_Os11g14050
OsAffx.30969.1.S1_at--571--4331Chr11:7797385..7797405 (21 bp)
CCATGGGATATTTGGACCCTGAATA
LOC_Os11g14050
OsAffx.30969.1.S1_at--719--5231Chr11:7797401..7797425 (25 bp)
GAATACTACATGACCCAGCAGTTGA
LOC_Os11g14050
OsAffx.30969.1.S1_at--1019--10611Chr11:7797449..7797473 (25 bp)
TTCGGTGTGCTACTACTTGAAGTGA
LOC_Os11g14050
OsAffx.30969.1.S1_at--500--3211Chr11:7797544..7797568 (25 bp)
CAAGGACCTATACGGCCTCCATGAG
LOC_Os11g14050
OsAffx.30969.1.S1_at--891--691Chr11:7797564..7797588 (25 bp)
ATGAGCTCCTAGACCCAATGCTAGC
LOC_Os11g14050
OsAffx.30969.1.S1_at--519--4711Chr11:7797598..7797622 (25 bp)
GCTGGCCGGCTTCGAACTGTATGTC
LOC_Os11g14050
OsAffx.30969.1.S1_at--146--2551Chr11:7797612..7797636 (25 bp)
AACTGTATGTCGACTTGGCTTTGAA
LOC_Os11g14050
OsAffx.30969.1.S1_at--33--851Chr11:7797656..7797680 (25 bp)
ATGGACCGCCCATCAATGAGTGAGG
LOC_Os11g14050
OsAffx.30969.1.S1_at--771--1031Chr11:7797729..7797753 (25 bp)
AGGTCGACTCGGCATCAAACTCGAT
LOC_Os11g14050
OsAffx.30969.1.S1_at--1037--5631Chr11:7797769..7797793 (25 bp)
GACACCGCGTCATCCATACAGTGGA
LOC_Os11g14050
Target Sequence 
TCTCCAAGCCTCTGAACCAGGATGGAAGGGGTCAGGTCACAACTCAAGTGAAAGGAACCATGGGATATTTGGACCCTGAA
TACTACATGACCCAGCAGTTGACCGAGAAGAGCGATGTCTACAGCTTCGGTGTGCTACTACTTGAAGTGATAACGGCGAG
AAAGCCATTAGAGAGGGGAAGGTACATCGTGCGTGAGGTGAAAGGTGCAATGGATAGGACCAAGGACCTATACGGCCTCC
ATGAGCTCCTAGACCCAATGCTAGCACCCACGTCGCTGGCCGGCTTCGAACTGTATGTCGACTTGGCTTTGAAGTGCGTG
GAGGAGGCAGGAATGGACCGCCCATCAATGAGTGAGGTGGTGGCGGAGATTGAGAAGATCATGAAGATGGCAGGCGTAAA
CCCAAAGGTCGACTCGGCATCAAACTCGATGAGCTACAACAGCAGGACACCGCGTCATCCATACAGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis