Browse Element(s) Details


OsAffx.30968.1.S1_at

Description tigr:9639.m01298
TID=OsAffx.30968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1402011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14000Os.54533.1.S1_at10/1111+7766615..7767947ANTH domain containing protein, expressed
LOC_Os11g14010Os.17018.1.S1_at11/1111+7772111..7779644PHD finger protein, putative, expressed
LOC_Os11g14020OsAffx.30968.1.S1_at11/1111+7781949..7783802transposon protein, putative, unclassified
LOC_Os11g14030OsAffx.18841.1.S1_at11/1111+7784619..7785586hypothetical protein
LOC_Os11g14040OsAffx.18842.1.S1_at11/1111+7787757..7789994Glutathione S-transferase zeta class, putative
LOC_Os11g14050OsAffx.30969.1.S1_at11/1111+7792536..7797853Protein kinase domain containing protein, expressed
LOC_Os11g14060Os.50314.1.S1_at8/1111+7799964..7801520expressed protein
LOC_Os11g14060Os.29856.2.S1_x_at4/1111+7799964..7801520expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30968.1.S1_at--561--5471Chr11:7782494..7782518 (25 bp)
GAACTCCAGGAAGACTTTGCGACTT
LOC_Os11g14020
OsAffx.30968.1.S1_at--547--9151Chr11:7782477..7782501 (25 bp)
TGCGACTTTCAGTAGCAAGCCGGTA
LOC_Os11g14020
OsAffx.30968.1.S1_at--635--5151Chr11:7782463..7782487 (25 bp)
GCAAGCCGGTAATGAAGTCTTCACA
LOC_Os11g14020
OsAffx.30968.1.S1_at--25--1531Chr11:7782423..7782447 (25 bp)
AGCATCAGAGCTCTACACCAAAGTT
LOC_Os11g14020
OsAffx.30968.1.S1_at--903--6851Chr11:7782396..7782420 (25 bp)
GTTTGACTTGTTTCAGGATGAGCTT
LOC_Os11g14020
OsAffx.30968.1.S1_at--467--10071Chr11:7782267..7782291 (25 bp)
TAGTGAACCACGTGCGAGCGTATCT
LOC_Os11g14020
OsAffx.30968.1.S1_at--451--4611Chr11:7782254..7782278 (25 bp)
GCGAGCGTATCTTGCAGTTGTCACA
LOC_Os11g14020
OsAffx.30968.1.S1_at--194--9191Chr11:7782206..7782230 (25 bp)
TGCCGGCATGCACTAAGGGTTTTGA
LOC_Os11g14020
OsAffx.30968.1.S1_at--52--9791Chr11:7782193..7782217 (25 bp)
TAAGGGTTTTGACAGCTATTGGCAT
LOC_Os11g14020
OsAffx.30968.1.S1_at--160--1571Chr11:7782180..7782204 (25 bp)
AGCTATTGGCATACCAGTGCTTCCT
LOC_Os11g14020
OsAffx.30968.1.S1_at--1096--7431Chr11:7782063..7782087 (25 bp)
GTGTAATGATTTGTGCCGTGATGGT
LOC_Os11g14020
Target Sequence 
GAACTCCAGGAAGACTTTGCGACTTTCAGTAGCAAGCCGGTAATGAAGTCTTCACATCCAATGGAAAAACAAGCATCAGA
GCTCTACACCAAAGTTATGTTTGACTTGTTTCAGGATGAGCTTATTGAATCATCGGGGTTTTTGGTGCAGAATGTTGAAA
GTGGGGACATAAGCAGATTTGAGGTAACACAATCTGAAAATGCCAATATAAGATACACTGTTCTTTATAGTGAACCACGT
GCGAGCGTATCTTGCAGTTGTCACAAATTTGAGTTTGCTGGTGTGCTGTGCCGGCATGCACTAAGGGTTTTGACAGCTAT
TGGCATACCAGTGCTTCCTGAAAATTATATTTTGAAGAGGTGGACAAGAAATGCCAAGAACAACATATTATCTCAAGTTC
CGGCAAACACAAAAGGGTCTTTGGCTTGGCGGTGTAATGATTTGTGCCGTGATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis