Browse Element(s) Details


Os.50314.1.S1_at

Description gb:AK120678.1
DB_XREF= gi:37990301
TID=Os.50314.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013162H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162H21, full insert sequence.
FL= gb:AK120678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g140608/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14010Os.17018.1.S1_at11/1111+7772111..7779644PHD finger protein, putative, expressed
LOC_Os11g14020OsAffx.30968.1.S1_at11/1111+7781949..7783802transposon protein, putative, unclassified
LOC_Os11g14030OsAffx.18841.1.S1_at11/1111+7784619..7785586hypothetical protein
LOC_Os11g14040OsAffx.18842.1.S1_at11/1111+7787757..7789994Glutathione S-transferase zeta class, putative
LOC_Os11g14050OsAffx.30969.1.S1_at11/1111+7792536..7797853Protein kinase domain containing protein, expressed
LOC_Os11g14060Os.50314.1.S1_at8/1111+7799964..7801520expressed protein
LOC_Os11g14060Os.29856.2.S1_x_at4/1111+7799964..7801520expressed protein
LOC_Os11g14070Os.51705.1.S1_at11/1111+7813470..7819529expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50314.1.S1_at--909--4151Chr11:7800454..7800478 (25 bp)
CGCCGCGAAGCAGAGTCTAACGTCG
LOC_Os11g14060
Os.50314.1.S1_at--46--3411Chr11:7800444..7800468 (25 bp)
CAGAGTCTAACGTCGCTCGCCAGGG
LOC_Os11g14060
Os.50314.1.S1_at--921--7591NONE
GGGCAGCCGAACACGCACAGGAGAA
NONE
Os.50314.1.S1_at--742--3351NONE
CACGCACAGGAGAAGCGTCGGCACA
NONE
Os.50314.1.S1_at--246--1451NONE
AGAAGCGTCGGCACAGAGGCCGCCT
NONE
Os.50314.1.S1_at--433--9031Chr11:7800370..7800394 (25 bp)
TGCACGAGCAGGTGGAGTCGCGGTC
LOC_Os11g14060
Os.50314.1.S1_at--32--1151Chr11:7800355..7800379 (25 bp)
AGTCGCGGTCGTCATTGGTGGAGTC
LOC_Os11g14060
Os.50314.1.S1_at--673--4657Chr01:27819302..27819326 (25 bp)
GCGTCGGCACGCAGTCGATGACATC
NONE
Os.50314.1.S1_at--183--4131Chr11:7800136..7800160 (25 bp)
CGCTTTGCCTCTCCCTGAAAGAGAG
LOC_Os11g14060
Os.50314.1.S1_at--276--8111Chr11:7800042..7800066 (25 bp)
GGACTCGGCAGCCACGTAGGACCAA
LOC_Os11g14060
Os.50314.1.S1_at--804--7631Chr11:7800004..7800028 (25 bp)
GGGACCTCTTGTGACTGGTTTTGAT
LOC_Os11g14060
Target Sequence 
CGCCGCGAAGCAGAGTCTAACGTCGCTCGCCAGGGGCAGCCGAACACGCACAGGAGAAGCGTCGGCACAGAGGCCGCCTC
GGCATGCACGAGCAGGTGGAGTCGCGGTCGTCATTGGTGGAGTCGCGGCGGACGACGCCGGCGACGCGTGGCTGCTTCAT
CCCGAACCGGATGGCTGCAGGTGCGTCGGCACGCAGTCGATGACATCGCCGTCGGGGCCGCCGCGTCGCCGTGTTTCCCG
CCAGCTGCCGCCGCTGGGCGCCGGCCGCCGTCGCCCTCCTCTCTCCTGCTGGCCTCTGGCCCTGCACCCGCCGGCCGCCG
CTTTGCCTCTCCCTGAAAGAGAGAAGAGGAGAAAAAGGAAGGGTGATGACGTGGATTACCATGACACGTGGGCCCCACAT
GGGTCCCACGCTGGACTCGGCAGCCACGTAGGACCAAACCGGGATTAAGAGGGACCTCTTGTGACTGGTTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis