Browse Element(s) Details


OsAffx.18841.1.S1_at

Description tigr:9639.m01299
TID=OsAffx.18841.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1403011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14000Os.54533.1.S1_at10/1111+7766615..7767947ANTH domain containing protein, expressed
LOC_Os11g14010Os.17018.1.S1_at11/1111+7772111..7779644PHD finger protein, putative, expressed
LOC_Os11g14020OsAffx.30968.1.S1_at11/1111+7781949..7783802transposon protein, putative, unclassified
LOC_Os11g14030OsAffx.18841.1.S1_at11/1111+7784619..7785586hypothetical protein
LOC_Os11g14040OsAffx.18842.1.S1_at11/1111+7787757..7789994Glutathione S-transferase zeta class, putative
LOC_Os11g14050OsAffx.30969.1.S1_at11/1111+7792536..7797853Protein kinase domain containing protein, expressed
LOC_Os11g14060Os.50314.1.S1_at8/1111+7799964..7801520expressed protein
LOC_Os11g14060Os.29856.2.S1_x_at4/1111+7799964..7801520expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18841.1.S1_at--127--4411Chr11:7785286..7785307 (22 bp)
GCCACCGAAATCCATTGTCTCGACG
LOC_Os11g14030
OsAffx.18841.1.S1_at--2--6731Chr11:7785084..7785108 (25 bp)
GTTCTGGTGATTGCCGTGCCAGTGC
LOC_Os11g14030
OsAffx.18841.1.S1_at--467--6131Chr11:7785049..7785073 (25 bp)
GAGGGCGATTGTGCTGCACAAGCCA
LOC_Os11g14030
OsAffx.18841.1.S1_at--1034--4632Chr11:7784969..7784993 (25 bp)
GCGTCAGCCCCGATTGGATCCACGG
LOC_Os11g14030
OsAffx.18841.1.S1_at--605--7971Chr11:7784839..7784978 (25 bp)
GGATCCACGGCCTCAAGAGCACCGG
LOC_Os11g14030
OsAffx.18841.1.S1_at--842--891Chr11:7784806..7784830 (25 bp)
AGGCGAGAGACCTCCATGGACGAGA
LOC_Os11g14030
OsAffx.18841.1.S1_at--969--1771Chr11:7784776..7784800 (25 bp)
ACCGTGCTCTCTTCGAGGAGCTAAC
LOC_Os11g14030
OsAffx.18841.1.S1_at--519--971Chr11:7784761..7784785 (25 bp)
AGGAGCTAACCATGGACGAGACCTC
LOC_Os11g14030
OsAffx.18841.1.S1_at--645--5991Chr11:7784744..7784768 (25 bp)
GAGACCTCCAACTTGACCATGGTAC
LOC_Os11g14030
OsAffx.18841.1.S1_at--317--812Chr11:7784726..7784750 (25 bp)
ATGGTACCATGGGTTCCCGTGCCCT
LOC_Os11g14030
OsAffx.18841.1.S1_at--166--7291Chr11:7784708..7784732 (25 bp)
GTGCCCTCAAATTCCCAGGAGGCCT
LOC_Os11g14030
Target Sequence 
GCCACCGAAATCCATTGTCTCGACGAGGAGGTGCCTCCGCCCGTTGTGCCCGAGCTGTGCGCGGCGCTACCGCCGCCGCA
GCCGGTGGCGGAGGTGCAAGTGTGCAGCGAGGAGGTTCTGGTGATTGCCGTGCCAGTGCCGAGCGAGGAGAGGGCGATTG
TGCTGCACAAGCCAGACGACGCCGCTCGCAACCTCCTCCTCGGCCCTCTCCGCCCGGAATTCCCTCTCCGCGTCAGCCCC
GATTGGATCCACGGCCTCAAGAGCACCGGGCTGCGAGAGGCGAGAGACCTCCATGGACGAGACCTCCACCGTGCTCTCTT
CGAGGAGCTAACCATGGACGAGACCTCCAACTTGACCATGGTACCATGGGTTCCCGTGCCCTCAAATTCCCAGGAGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis