Browse Element(s) Details


Os.17018.1.S1_at

Description gb:AK103215.1
DB_XREF= gi:32988424
TID=Os.17018.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122M22, full insert sequence.
FL= gb:AK103215.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1401011/11PHD finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13990OsAffx.30967.1.S1_at11/1111+7748786..7755776ATPase, AAA family protein
LOC_Os11g13990Os.51398.1.S1_x_at11/1111+7748786..7755776ATPase, AAA family protein
LOC_Os11g14000Os.54533.1.S1_at10/1111+7766615..7767947ANTH domain containing protein, expressed
LOC_Os11g14010Os.17018.1.S1_at11/1111+7772111..7779644PHD finger protein, putative, expressed
LOC_Os11g14020OsAffx.30968.1.S1_at11/1111+7781949..7783802transposon protein, putative, unclassified
LOC_Os11g14030OsAffx.18841.1.S1_at11/1111+7784619..7785586hypothetical protein
LOC_Os11g14040OsAffx.18842.1.S1_at11/1111+7787757..7789994Glutathione S-transferase zeta class, putative
LOC_Os11g14050OsAffx.30969.1.S1_at11/1111+7792536..7797853Protein kinase domain containing protein, expressed
LOC_Os11g14060Os.50314.1.S1_at8/1111+7799964..7801520expressed protein
LOC_Os11g14060Os.29856.2.S1_x_at4/1111+7799964..7801520expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17018.1.S1_at--741--6411Chr11:7772584..7772608 (25 bp)
GATCTGCTGCGATGCTTGTGAGACA
LOC_Os11g14010
Os.17018.1.S1_at--636--2871Chr11:7772547..7772571 (25 bp)
AAGTGTGTCAAGATAACCCCTGCCA
LOC_Os11g14010
Os.17018.1.S1_at--991--4411Chr11:7772466..7772490 (25 bp)
GCCAGAGCTTGATGGTGGATCCCTC
LOC_Os11g14010
Os.17018.1.S1_at--670--7971Chr11:7772450..7772474 (25 bp)
GGATCCCTCTATGGCTTATGTCTGA
LOC_Os11g14010
Os.17018.1.S1_at--717--10271Chr11:7772414..7772438 (25 bp)
TTTGACTCGCTGTAAAGACCCTCAT
LOC_Os11g14010
Os.17018.1.S1_at--765--5811Chr11:7772398..7772422 (25 bp)
GACCCTCATGAGATAGAATGCCCAA
LOC_Os11g14010
Os.17018.1.S1_at--203--272Chr11:7772370..7772394 (25 bp)
ATATGCATTCAGCTGTTGGTTTTCA
LOC_Os11g14010
Os.17018.1.S1_at--194--6811Chr11:7772352..7772376 (25 bp)
GTTTTCAGTTTAGGACCAGCTTTAG
LOC_Os11g14010
Os.17018.1.S1_at--596--291Chr11:7772251..7772275 (25 bp)
ATAGCTTATGCTTCTTCAAGCCCTT
LOC_Os11g14010
Os.17018.1.S1_at--1011--9711Chr11:7772236..7772260 (25 bp)
TCAAGCCCTTCTAAGTGCACCTGTA
LOC_Os11g14010
Os.17018.1.S1_at--244--5091Chr11:7772220..7772244 (25 bp)
GCACCTGTACTGGACTCTTTAGTGT
LOC_Os11g14010
Target Sequence 
GATCTGCTGCGATGCTTGTGAGACATGGTTCCACGGTAAGTGTGTCAAGATAACCCCTGCCAAGGCTGAGCACATCAAGC
ACTACAAGTGCCCGANACTNGCAGCAGTAGTAGCAAGAGAGCCAGAGCTTGATGGTGGATCCCTCTATGGCTTATGTCTG
AAGAACCAAGAATTTGACTCGCTGTAAAGACCCTCATGAGATAGAATGCCCAATGGATATGCATTCAGCTGTTGGTTTTC
AGTTTAGGACCAGCTTTAGGGTCTTTAATGTGTTGTTTGGTGTATGTCAATGGCATCAATTCTAGATTTTCTGTTAGTAG
TAGAAACTAACTGTAATAGCTTATGCTTCTTCAAGCCCTTCTAAGTGCACCTGTACTGGACTCTTTAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis