Browse Element(s) Details


OsAffx.18842.1.S1_at

Description tigr:9639.m01300
TID=OsAffx.18842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=maleylacetoacetate isomerase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1404011/11Glutathione S-transferase zeta class, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14000Os.54533.1.S1_at10/1111+7766615..7767947ANTH domain containing protein, expressed
LOC_Os11g14010Os.17018.1.S1_at11/1111+7772111..7779644PHD finger protein, putative, expressed
LOC_Os11g14020OsAffx.30968.1.S1_at11/1111+7781949..7783802transposon protein, putative, unclassified
LOC_Os11g14030OsAffx.18841.1.S1_at11/1111+7784619..7785586hypothetical protein
LOC_Os11g14040OsAffx.18842.1.S1_at11/1111+7787757..7789994Glutathione S-transferase zeta class, putative
LOC_Os11g14050OsAffx.30969.1.S1_at11/1111+7792536..7797853Protein kinase domain containing protein, expressed
LOC_Os11g14060Os.50314.1.S1_at8/1111+7799964..7801520expressed protein
LOC_Os11g14060Os.29856.2.S1_x_at4/1111+7799964..7801520expressed protein
LOC_Os11g14070Os.51705.1.S1_at11/1111+7813470..7819529expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18842.1.S1_at--168--8131Chr11:7788019..7788043 (25 bp)
GGACTACGAGTACAAGCCGATCAAT
LOC_Os11g14040
OsAffx.18842.1.S1_at--492--2371Chr11:7788052..7788244 (25 bp)
AAACGAGCAGTCACACCCAGAATTT
LOC_Os11g14040
OsAffx.18842.1.S1_at--1114--6311Chr11:7788491..7788515 (25 bp)
GATGAAGTATGTCCCGGCACTGGTC
LOC_Os11g14040
OsAffx.18842.1.S1_at--654--2131Chr11:7788528..7788552 (25 bp)
ACAGTCGTCGTGGATTCCTTTGCGA
LOC_Os11g14040
OsAffx.18842.1.S1_at--244--4311Chr11:7788544..7788671 (25 bp)
CCTTTGCGATCTTGCTGTATCTTGA
LOC_Os11g14040
OsAffx.18842.1.S1_at--1134--2551Chr11:7789260..7789284 (25 bp)
AACTGGATCCAATATCACCTCAACA
LOC_Os11g14040
OsAffx.18842.1.S1_at--973--7571Chr11:7789286..7789472 (25 bp)
GGGCTTCACAGCTCTCGAGAAAATG
LOC_Os11g14040
OsAffx.18842.1.S1_at--833--3251Chr11:7789665..7789684 (20 bp)
CAACTGGGAGACCTCTTTCTGGAAC
LOC_Os11g14040
OsAffx.18842.1.S1_at--469--8171Chr11:7789680..7789704 (25 bp)
GGAACCCCAGATATACGGTGGCATT
LOC_Os11g14040
OsAffx.18842.1.S1_at--554--2671Chr11:7789705..7789725 (21 bp)
AAGCGCTTTGGGATCGACATGACAA
LOC_Os11g14040
OsAffx.18842.1.S1_at--245--2111Chr11:7789883..7789903 (21 bp)
ACATGACAAATTACCCTACCTTGGC
LOC_Os11g14040
Target Sequence 
GGACTACGAGTACAAGCCGATCAATCTCCTTGCAAACGAGCAGTCACACCCAGAATTTGAGAAGCTGAACCCGATGAAGT
ATGTCCCGGCACTGGTCGACGGTGACGACACAGTCGTCGTGGATTCCTTTGCGATCTTGCTGTATCTTGAGGACACTTAC
CCTCAACATCCTTTGTTGCCACAAGACCCAAAAATGAAGGCACTGAATATCCAGATTGCAAGTATAGTTGGTTCAAGCAT
TCAACCACTTCAGAACAATTCTGTCCTTGATTTTATTGAGGAGAAATTAGACTCACAGGAGAAAGTTAACTGGATCCAAT
ATCACCTCAACAGGGGCTTCACAGCTCTCGAGAAAATGTTGAAAGGTTGCACAACTACATATGCCACTGGAGATGAAATC
CAACTGGGAGACCTCTTTCTGGAACCCCAGATATACGGTGGCATTAAGCGCTTTGGGATCGACATGACAAATTACCCTAC
CTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis