Browse Element(s) Details


Os.5363.1.S1_at

Description gb:AU174652
DB_XREF= gi:13420562
DB_XREF=AU174652
CLONE=F10174
TID=Os.5363.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.5363 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cadmium-induced protein-like (OJ1343_B12.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0504011/11cadmium-induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05000Os.11674.1.S1_at11/117+2195873..2199716oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05010Os.44516.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010Os.15089.1.S1_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_at10/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05020OsAffx.22498.1.S1_at9/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55138.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.2.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.20707.2.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55476.1.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05030OsAffx.28277.1.S1_at10/117+2216587..2217757hypothetical protein
LOC_Os07g05040Os.5363.1.S1_at11/117+2221229..2223216cadmium-induced protein, putative, expressed
LOC_Os07g05050Os.38341.1.S1_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05050Os.38341.1.S1_x_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05060Os.35959.1.S1_at10/117+2230274..2232730expressed protein
LOC_Os07g05070OsAffx.28278.1.S1_at10/117+2233716..2234318hypothetical protein
LOC_Os07g05084OsAffx.1499.1.S1_at11/117+2241974..2243857expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5363.1.S1_at--420--4451Chr07:2222656..2222680 (25 bp)
GCCTCATCAGGAACCAGTACCACAG
LOC_Os07g05040
Os.5363.1.S1_at--1131--10511Chr07:2221726..2221750 (25 bp)
TTCGCAAGCAATATCCCTTTCGAAT
LOC_Os07g05040
Os.5363.1.S1_at--840--4931Chr07:2221668..2221692 (25 bp)
GCTTGGTCTGGGATGCCATCAGTTA
LOC_Os07g05040
Os.5363.1.S1_at--297--9191Chr07:2221655..2221679 (25 bp)
TGCCATCAGTTATGCGAGCCAGGTA
LOC_Os07g05040
Os.5363.1.S1_at--268--5511Chr07:2221619..2221643 (25 bp)
GAAAGAATCTCGACAAAGGCTCCTA
LOC_Os07g05040
Os.5363.1.S1_at--454--5571Chr07:2221608..2221632 (25 bp)
GACAAAGGCTCCTAAACTTTCATGA
LOC_Os07g05040
Os.5363.1.S1_at--1031--2371Chr07:2221583..2221607 (25 bp)
AAACCCTCAGATTTCAGGAGGCGTT
LOC_Os07g05040
Os.5363.1.S1_at--718--11Chr07:2221568..2221592 (25 bp)
AGGAGGCGTTAACCTGCCCAAGTTG
LOC_Os07g05040
Os.5363.1.S1_at--18--3291Chr07:2221490..2221514 (25 bp)
CAAAGATCAGCATTGGCCTCCATAA
LOC_Os07g05040
Os.5363.1.S1_at--1055--8491Chr07:2221429..2221453 (25 bp)
TGGCACGCTTACTCTAAGATGAAGA
LOC_Os07g05040
Os.5363.1.S1_at--305--9571Chr07:2221402..2221426 (25 bp)
TCTTCGGTATTAGTTAGTGTTTCCA
LOC_Os07g05040
Target Sequence 
GCCTCATCAGGAACCAGTACCACAGCNNNTTCGCAAGCAATATCCCTTTCGAATNNNNTAGGTTTTANCACCTTTACCAT
CATCAGAGGCTTGGTCTGGGATGCCATCAGTTATGCGAGCCAGGTAGCGGCTGTGAGGAAAGAATCTCGACAAAGGCTCC
TAAACTTTCATGAAAACCCTCAGATTTCAGGAGGCGTTAACCTGCCCAAGTTGGGGAAGGGCGTGTCAAGCAGCATCCAA
TCCACTATGGAGTGTATAAAAGCCTTCAAAGATCAGCATTGGCCTCCATAAAGTAACTAAGGATGGANTTGTGTAAGTTA
GAAACCCNTGGCACGCTTACTCTAAGATGAAGATATCTTCGGTATTAGTTAGTGTTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis