Browse Element(s) Details


Os.38341.1.S1_x_at

Description gb:AK068871.1
DB_XREF= gi:32978896
TID=Os.38341.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169B18, full insert sequence.
FL= gb:AK068871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0505011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05000Os.11674.1.S1_at11/117+2195873..2199716oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05010Os.44516.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010Os.15089.1.S1_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_at10/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05020OsAffx.22498.1.S1_at9/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55138.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.2.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.20707.2.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55476.1.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05030OsAffx.28277.1.S1_at10/117+2216587..2217757hypothetical protein
LOC_Os07g05040Os.5363.1.S1_at11/117+2221229..2223216cadmium-induced protein, putative, expressed
LOC_Os07g05050Os.38341.1.S1_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05050Os.38341.1.S1_x_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05060Os.35959.1.S1_at10/117+2230274..2232730expressed protein
LOC_Os07g05070OsAffx.28278.1.S1_at10/117+2233716..2234318hypothetical protein
LOC_Os07g05084OsAffx.1499.1.S1_at11/117+2241974..2243857expressed protein
LOC_Os07g05100OsAffx.16092.1.S1_at11/117+2251212..2252853hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016070biological_processRNA metabolism
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005739cellular_componentmitochondrion
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
GO:0017151molecular_functionDEAD/H-box RNA helicase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38341.1.S1_x_at--130--8871Chr07:2224482..2224506 (25 bp)
TGATGGCTTTGGCAGTTCCCCTAAT
LOC_Os07g05050
Os.38341.1.S1_x_at--756--7631Chr07:2224451..2224475 (25 bp)
GGGAGATCACGCGATGCTGGTTCAA
LOC_Os07g05050
Os.38341.1.S1_x_at--581--6051Chr07:2224408..2224432 (25 bp)
GAGATTTTAGACGACCCTCCAATGC
LOC_Os07g05050
Os.38341.1.S1_x_at--95--2991Chr07:2224388..2224412 (25 bp)
AATGCCTTTGGCAGGTCTAGTTCCA
LOC_Os07g05050
Os.38341.1.S1_x_at--1130--8851Chr07:2224284..2224308 (25 bp)
TGATGATTCAGGTTCGACACGGTAC
LOC_Os07g05050
Os.38341.1.S1_x_at--758--1491Chr07:2224259..2224283 (25 bp)
AGCAGACGCCCTAATGGTTTTGGAA
LOC_Os07g05050
Os.38341.1.S1_x_at--115--8371Chr07:2224214..2224238 (25 bp)
GGCGGGTTCGATGATTCCAACTGAT
LOC_Os07g05050
Os.38341.1.S1_x_at--922--2551Chr07:2224196..2224220 (25 bp)
AACTGATCACAGGACTCCGGTTTGT
LOC_Os07g05050
Os.38341.1.S1_x_at--11--251Chr07:2224018..2224042 (25 bp)
ATATACTCTAGCCTGTACCTTTTGG
LOC_Os07g05050
Os.38341.1.S1_x_at--187--1751Chr07:2224002..2224026 (25 bp)
ACCTTTTGGTTATGCACTCTCTCAA
LOC_Os07g05050
Os.38341.1.S1_x_at--440--10351Chr07:2223936..2223960 (25 bp)
TTTATGTCCATGTACTCCCTGTTGA
LOC_Os07g05050
Target Sequence 
TGATGGCTTTGGCAGTTCCCCTAATCGTGGTGGGAGATCACGCGATGCTGGTTCAAGATATGGCAGTGGGTTTGGAGATT
TTAGACGACCCTCCAATGCCTTTGGCAGGTCTAGTTCCAAGCAGCCTGATGGATTCGGATTTGGTGACTTTGGAGAAGGC
AATTTCAGTAGAAATGGCAACAGACGCTCTAGGAGTTTTGATGATTCAGGTTCGACACGGTACAGCAGACGCCCTAATGG
TTTTGGAACATCAGATTTCGGCAGANCAGGCGGGTTCGATGATTCCAACTGATCACAGGACTCCGGTTTGTATAGTTTTG
TGGTTTTTGACCTTCAATCTTCTTTTCTATGTCATGAATGAGATCACCNNTCGCTTTTTCTGGCGCTTGGCCTAAGTAGT
CTGTTGTTGTAGCCNAATAAGTAGCCTTGCTTGTGTATTAGGTTTGTTCCNAAACANTGTAATGTATATACTCTAGCCTG
TACCTTTTGGTTATGCACTCTCTCAACNAAGTGTAAGAAAATTCTGAAAATGAGGAACCTTTCATTATTTATGTCCATGT
ACTCCCTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38341.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis