Browse Element(s) Details


OsAffx.1499.1.S1_at

Description gb:NM_186274.1
DB_XREF= gi:34899633
GEN=OJ1343_B12.16
TID=OsAffx.1499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1343_B12.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0508411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05030OsAffx.28277.1.S1_at10/117+2216587..2217757hypothetical protein
LOC_Os07g05040Os.5363.1.S1_at11/117+2221229..2223216cadmium-induced protein, putative, expressed
LOC_Os07g05050Os.38341.1.S1_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05050Os.38341.1.S1_x_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05060Os.35959.1.S1_at10/117+2230274..2232730expressed protein
LOC_Os07g05070OsAffx.28278.1.S1_at10/117+2233716..2234318hypothetical protein
LOC_Os07g05084OsAffx.1499.1.S1_at11/117+2241974..2243857expressed protein
LOC_Os07g05100OsAffx.16092.1.S1_at11/117+2251212..2252853hypothetical protein
LOC_Os07g05110Os.18494.1.S1_at10/117+2255620..2257435Patatin-like phospholipase family protein, expressed
LOC_Os07g05120OsAffx.28280.1.S1_at11/117+2257844..2259856hypothetical protein
LOC_Os07g05140OsAffx.29313.1.S1_at1/117+2267989..2272456transposon protein, putative, Mutator sub-class
LOC_Os07g05140Os.56216.1.S1_at1/117+2267989..2272456transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1499.1.S1_at--1144--811Chr07:2242120..2242144 (25 bp)
ATGGTTCCTGGTCGCCCTCGACTTC
LOC_Os07g05084
OsAffx.1499.1.S1_at--879--9291Chr07:2242147..2242624 (25 bp)
TCCCGCTCCTCCCAGGGTGTGGTTT
LOC_Os07g05084
OsAffx.1499.1.S1_at--858--9231Chr07:2242153..2242630 (25 bp)
TCCTCCCAGGGTGTGGTTTCTGCTG
LOC_Os07g05084
OsAffx.1499.1.S1_at--765--9311Chr07:2242612..2242633 (22 bp)
TCCCAGGGTGTGGTTTCTGCTGCTG
LOC_Os07g05084
OsAffx.1499.1.S1_at--479--7731Chr07:2242615..2242639 (25 bp)
GGTGTGGTTTCTGCTGCTGGATCTA
LOC_Os07g05084
OsAffx.1499.1.S1_at--448--7511Chr07:2242618..2242642 (25 bp)
GTGGTTTCTGCTGCTGGATCTATCA
LOC_Os07g05084
OsAffx.1499.1.S1_at--268--8591Chr07:2242619..2242643 (25 bp)
TGGTTTCTGCTGCTGGATCTATCAG
LOC_Os07g05084
OsAffx.1499.1.S1_at--1033--6831Chr07:2242621..2242645 (25 bp)
GTTTCTGCTGCTGGATCTATCAGCT
LOC_Os07g05084
OsAffx.1499.1.S1_at--441--9491Chr07:2242624..2242648 (25 bp)
TCTGCTGCTGGATCTATCAGCTTTA
LOC_Os07g05084
OsAffx.1499.1.S1_at--841--4771Chr07:2242627..2242651 (25 bp)
GCTGCTGGATCTATCAGCTTTAGTA
LOC_Os07g05084
OsAffx.1499.1.S1_at--303--3891Chr07:2242631..2242655 (25 bp)
CTGGATCTATCAGCTTTAGTAAGGG
LOC_Os07g05084
Target Sequence 
ATGGTTCCTGGTCGCCCTCGACTTCTCTCCCGCTCCTCCCAGGGTGTGGTTTCTGCTGCTGGATCTATCAGCTTTAGTAA
GGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis