Browse Element(s) Details


OsAffx.28280.1.S1_at

Description tigr:9635.m00445
TID=OsAffx.28280.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0512011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05070OsAffx.28278.1.S1_at10/117+2233716..2234318hypothetical protein
LOC_Os07g05084OsAffx.1499.1.S1_at11/117+2241974..2243857expressed protein
LOC_Os07g05100OsAffx.16092.1.S1_at11/117+2251212..2252853hypothetical protein
LOC_Os07g05110Os.18494.1.S1_at10/117+2255620..2257435Patatin-like phospholipase family protein, expressed
LOC_Os07g05120OsAffx.28280.1.S1_at11/117+2257844..2259856hypothetical protein
LOC_Os07g05140OsAffx.29313.1.S1_at1/117+2267989..2272456transposon protein, putative, Mutator sub-class
LOC_Os07g05140Os.56216.1.S1_at1/117+2267989..2272456transposon protein, putative, Mutator sub-class
LOC_Os07g05150OsAffx.28281.1.S1_x_at11/117+2284148..2284621Skp1 family, dimerisation domain containing protein
LOC_Os07g05150OsAffx.28281.1.S1_at11/117+2284148..2284621Skp1 family, dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28280.1.S1_at--742--8891Chr07:2258928..2258952 (25 bp)
TGAGAGTCACCGAGTTGGAGCAGCT
LOC_Os07g05120
OsAffx.28280.1.S1_at--1067--3591Chr07:2258843..2258867 (25 bp)
CATTGCTGAGTTGCGCGCGGACATC
LOC_Os07g05120
OsAffx.28280.1.S1_at--457--1451Chr07:2258814..2258838 (25 bp)
AGAAGCGCGCTGATCAGCTTGAGAA
LOC_Os07g05120
OsAffx.28280.1.S1_at--569--1391Chr07:2258733..2258757 (25 bp)
AGACGATTACTTGGGTACTGCAAAA
LOC_Os07g05120
OsAffx.28280.1.S1_at--162--951Chr07:2258697..2258721 (25 bp)
AGGAAGAGTTGGCTCACTCTCGCCA
LOC_Os07g05120
OsAffx.28280.1.S1_at--73--9871Chr07:2258658..2258682 (25 bp)
TACACTGCACTCAGCTTGCTCAAGA
LOC_Os07g05120
OsAffx.28280.1.S1_at--603--6291Chr07:2258074..2258098 (25 bp)
GATGATATCCTGACCTCCAAATTCA
LOC_Os07g05120
OsAffx.28280.1.S1_at--129--3151Chr07:2258055..2258079 (25 bp)
AATTCACCGTGTCAATCACTGCGTG
LOC_Os07g05120
OsAffx.28280.1.S1_at--1107--4891Chr07:2258004..2258028 (25 bp)
GCTTCGGTGGAGTCACGGCGTTCTA
LOC_Os07g05120
OsAffx.28280.1.S1_at--637--6731Chr07:2257985..2258009 (25 bp)
GTTCTACGTGCCTTACGTCATCAAA
LOC_Os07g05120
OsAffx.28280.1.S1_at--262--631Chr07:2257912..2257936 (25 bp)
ATGCTGCAGGGTATCGCGGATGCAA
LOC_Os07g05120
Target Sequence 
TGAGAGTCACCGAGTTGGAGCAGCTTGTGAGGAGCCTTGAGAAGAGACTGGAGGATGTGGAAGCGAAATGGGACGCCAAC
CTGCGCATTGCTGAGTTGCGCGCGGACATCGCTGAGAAGCGCGCTGATCAGCTTGAGAAATTGCTGGAGAAGACAGTGGA
GGGTATGGAGAGAATGGTGAATAACAAGATGGAGCAGACGATTACTTGGGTACTGCAAAAGAACTTCCAGCAGGAAGAGT
TGGCTCACTCTCGCCACAGCTCCTTGCTCCTACACTGCACTCAGCTTGCTCAAGAAATGGCTGCAACTAAAGATGAACTC
CACTCAGTGAGGAGAAACTACAGGGATGATATCCTGACCTCCAAATTCACCGTGTCAATCACTGCGTGGCGCATCGTGCT
GGTGCTACTGGGGGGCTTCGGTGGAGTCACGGCGTTCTACGTGCCTTACGTCATCAAAGATATCAAGCTGGAGACATGCG
AAGAAGTAGCCAAGAGGATTTCAGAGATGCTGCAGGGTATCGCGGATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis