Browse Element(s) Details


OsAffx.28277.1.S1_at

Description tigr:9635.m00435
TID=OsAffx.28277.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0503010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04990Os.8112.1.S1_at11/117+2192109..2195348oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05000Os.11674.1.S1_at11/117+2195873..2199716oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05010Os.44516.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010Os.15089.1.S1_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_at10/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05020OsAffx.22498.1.S1_at9/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55138.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.2.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.20707.2.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55476.1.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05030OsAffx.28277.1.S1_at10/117+2216587..2217757hypothetical protein
LOC_Os07g05040Os.5363.1.S1_at11/117+2221229..2223216cadmium-induced protein, putative, expressed
LOC_Os07g05050Os.38341.1.S1_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05050Os.38341.1.S1_x_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05060Os.35959.1.S1_at10/117+2230274..2232730expressed protein
LOC_Os07g05070OsAffx.28278.1.S1_at10/117+2233716..2234318hypothetical protein
LOC_Os07g05084OsAffx.1499.1.S1_at11/117+2241974..2243857expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28277.1.S1_at--584--9451Chr07:2216632..2216656 (25 bp)
TCTGTGTGTGCCTGTTTTGCAAAGA
LOC_Os07g05030
OsAffx.28277.1.S1_at--354--3291Chr07:2216651..2216675 (25 bp)
CAAAGAGCTGGCTTTCTGGACTGGG
LOC_Os07g05030
OsAffx.28277.1.S1_at--756--5732Chr07:2216669..2216693 (25 bp)
GACTGGGCTTTGTCTCTGGGTGTTT
LOC_Os07g05030
OsAffx.28277.1.S1_at--840--5371Chr07:2216695..2216719 (25 bp)
GAAGCAAGTAGGATTCCCCTGTGCA
LOC_Os07g05030
OsAffx.28277.1.S1_at--373--10091Chr07:2216703..2216727 (25 bp)
TAGGATTCCCCTGTGCAGGACAGAT
LOC_Os07g05030
OsAffx.28277.1.S1_at--861--9031Chr07:2216716..2216740 (25 bp)
TGCAGGACAGATGTGGACCAGACCT
LOC_Os07g05030
OsAffx.28277.1.S1_at--956--8091NONE
GGACCAGACCTGTTGTATCTTAATT
NONE
OsAffx.28277.1.S1_at--77--431Chr07:2217355..2217379 (25 bp)
ATCTTAATTTGCCAAGTTGTTCGGA
LOC_Os07g05030
OsAffx.28277.1.S1_at--98--2831Chr07:2217368..2217392 (25 bp)
AAGTTGTTCGGATTATGTCACCGGG
LOC_Os07g05030
OsAffx.28277.1.S1_at--592--951Chr07:2217430..2217454 (25 bp)
AGGATCCATGGTTTAGACGGAGGCT
LOC_Os07g05030
OsAffx.28277.1.S1_at--955--5291Chr07:2217664..2217688 (25 bp)
GAAGGCGGCGACAAAATATGAAGGA
LOC_Os07g05030
Target Sequence 
TCTGTGTGTGCCTGTTTTGCAAAGAGCTGGCTTTCTGGACTGGGCTTTGTCTCTGGGTGTTTGGAAGCAAGTAGGATTCC
CCTGTGCAGGACAGATGTGGACCAGACCTGTTGTATCTTAATTTGCCAAGTTGTTCGGATTATGTCACCGGGGTGGGTGG
GTGTATTAAGGATAGGGATGGGAAGAGGAAGGATCCATGGTTTAGACGGAGGCTGGGGAGGGGTGAAGGATGGGGTAGAT
TTGAAGGCGGCGACAAAATATGAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis