Browse Element(s) Details


OsAffx.2974.1.S1_s_at

Description tigr:9630.m04454
TID=OsAffx.2974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sulfotransferase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4589011/11Sulfotransferase domain containing protein, expressed
LOC_Os07g049101/11Reticulon family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45860Os.53431.1.S1_at11/112+27953928..27954689expressed protein
LOC_Os02g45870Os.53134.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45870Os.53054.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45880OsAffx.12512.1.S1_at11/112+27959724..27960431expressed protein
LOC_Os02g45890OsAffx.2974.1.S1_s_at11/112+27961606..27962975Sulfotransferase domain containing protein, expressed
LOC_Os02g45900OsAffx.2975.1.S1_at11/112+27964235..27966164hypothetical protein
LOC_Os02g45910OsAffx.12696.1.S1_at11/112+27971718..27973941tRNA-splicing endonuclease positive effector, putative
LOC_Os02g45920Os.17229.1.S1_at10/112+27979070..27983486expressed protein
LOC_Os02g45930Os.49582.1.S1_at11/112+27983621..27984706expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005783cellular_componentendoplasmic reticulum
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2974.1.S1_s_at--1122--9251Chr02:27962113..27962137 (25 bp)
TCCCCGAAACTATCGTGGAGCTCTG
LOC_Os02g45890
OsAffx.2974.1.S1_s_at--707--4411Chr02:27961891..27961915 (25 bp)
GCCACCGCCAGTATTGATTGATCGA
LOC_Os02g45890
OsAffx.2974.1.S1_s_at--289--9371Chr02:27961870..27961894 (25 bp)
TCGAGGTCGTGGGTCAATTGTTCAA
LOC_Os02g45890
OsAffx.2974.1.S1_s_at--1123--6751Chr02:27961851..27961875 (25 bp)
GTTCAAGTCCTCAAGTGTGTCATGC
LOC_Os02g45890
OsAffx.2974.1.S1_s_at--157--1111Chr02:27961838..27961862 (25 bp)
AGTGTGTCATGCTTATGCAGATGCA
LOC_Os02g45890
OsAffx.2974.1.S1_s_at--977--7872Chr07:2170104..2170250 (25 bp)
GGTTTTCTTTCTCTGCATCTTGTGT
LOC_Os07g04910
OsAffx.2974.1.S1_s_at--1158--7391Chr02:27961771..27961795 (25 bp)
GTGTTGCATGCATGGCTTCGTTGCC
LOC_Os02g45890
OsAffx.2974.1.S1_s_at--396--831Chr02:27961746..27961770 (25 bp)
ATGGCAACTTGCTCGATCGGCCAAA
LOC_Os02g45890
OsAffx.2974.1.S1_s_at--602--491Chr02:27961731..27961755 (25 bp)
ATCGGCCAAAACGTTGCTCGGGATT
LOC_Os02g45890
OsAffx.2974.1.S1_s_at--274--4811Chr02:27961716..27961740 (25 bp)
GCTCGGGATTGCTAACATGGGCCAA
LOC_Os02g45890
OsAffx.2974.1.S1_s_at--738--3491Chr02:27961701..27961725 (25 bp)
CATGGGCCAAGTTATTTCTTTGACC
LOC_Os02g45890
Target Sequence 
TCCCCGAAACTATCGTGGAGCTCTGCAGTATGGAAAGGATGAGAAACGTGGAGGCAAATCGAGACGGCGAGCACGGGGCT
ACCTGGTCGTCGTTCAAGAACTCGGCCTTCTTCAGGAAGGGTGAGGTCGGAGACTGGAAGGAGCACATGTCGCCGGAGAT
GGCGCGGAGGCTCGACGACGTCGTGGAGGAGAAGCTGCGAGGCTCCCGGATGTCGCTGATCCGCCACCGCCAGTATTGAT
TGATCGAGGTCGTGGGTCAATTGTTCAAGTCCTCAAGTGTGTCATGCTTATGCAGATGCATTAGCAACTTTATTTTCGTC
TGGTTTTCTTTCTCTGCATCTTGTGTTGCATGCATGGCTTCGTTGCCATGGCAACTTGCTCGATCGGCCAAAACGTTGCT
CGGGATTGCTAACATGGGCCAAGTTATTTCTTTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2974.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis