Browse Element(s) Details


Os.53134.1.S1_at

Description gb:AK070960.1
DB_XREF= gi:32980983
TID=Os.53134.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023068B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023068B22, full insert sequence.
FL= gb:AK070960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4587011/11tobamovirus multiplication protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45860Os.53431.1.S1_at11/112+27953928..27954689expressed protein
LOC_Os02g45870Os.53134.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45870Os.53054.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45880OsAffx.12512.1.S1_at11/112+27959724..27960431expressed protein
LOC_Os02g45890OsAffx.2974.1.S1_s_at11/112+27961606..27962975Sulfotransferase domain containing protein, expressed
LOC_Os02g45900OsAffx.2975.1.S1_at11/112+27964235..27966164hypothetical protein
LOC_Os02g45910OsAffx.12696.1.S1_at11/112+27971718..27973941tRNA-splicing endonuclease positive effector, putative
LOC_Os02g45920Os.17229.1.S1_at10/112+27979070..27983486expressed protein
LOC_Os02g45930Os.49582.1.S1_at11/112+27983621..27984706expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046786biological_processviral replication complex formation and maintenance
GO:0005774cellular_componentvacuolar membrane
GO:0005515molecular_functionprotein binding
GO:0046790molecular_functionvirion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53134.1.S1_at--1061--8011Chr02:27957398..27957422 (25 bp)
GGAGGTATTTGTTCAATTTCACTTG
LOC_Os02g45870
Os.53134.1.S1_at--561--2831Chr02:27957429..27957453 (25 bp)
AAGTTACATGCTCAACTCCCTTTGT
LOC_Os02g45870
Os.53134.1.S1_at--259--4191Chr02:27957446..27957470 (25 bp)
CCCTTTGTGCTTTTGAGTTTAATGT
LOC_Os02g45870
Os.53134.1.S1_at--949--8671Chr02:27957468..27957492 (25 bp)
TGTGATTTCAATCTGCAGCGAGGTG
LOC_Os02g45870
Os.53134.1.S1_at--669--5071Chr02:27957482..27957506 (25 bp)
GCAGCGAGGTGTTCTATCTTTGCAG
LOC_Os02g45870
Os.53134.1.S1_at--1116--2851Chr02:27957525..27957549 (25 bp)
AAGTGAACCCTGAGGTCTGGACATC
LOC_Os02g45870
Os.53134.1.S1_at--507--1031Chr02:27957537..27957561 (25 bp)
AGGTCTGGACATCTTTGCTATTTTC
LOC_Os02g45870
Os.53134.1.S1_at--1148--8771Chr02:27957573..27957597 (25 bp)
TGTTATGTTTCACCCAATTGGCCAG
LOC_Os02g45870
Os.53134.1.S1_at--182--8451Chr02:27957592..27957616 (25 bp)
GGCCAGAGTTATATTCTTCATTCAT
LOC_Os02g45870
Os.53134.1.S1_at--107--10371Chr02:27957616..27957640 (25 bp)
TTTTTATTCCAGATCTTTCAGCATG
LOC_Os02g45870
Os.53134.1.S1_at--296--6891Chr02:27957852..27957876 (25 bp)
GTATAATTCCGTTAGCATTGCAATA
LOC_Os02g45870
Target Sequence 
GGAGGTATTTGTTCAATTTCACTTGTAGTACAAGTTACATGCTCAACTCCCTTTGTGCTTTTGAGTTTAATGTGATTTCA
ATCTGCAGCGAGGTGTTCTATCTTTGCAGTCCGCCGCCAAGTCCAACAAGTGAACCCTGAGGTCTGGACATCTTTGCTAT
TTTCTGTCTTGTAATTGTTATGTTTCACCCAATTGGCCAGAGTTATATTCTTCATTCATTTTTATTCCAGATCTTTCAGC
ATGTTATTCTTGATCTTCCGGGGCTTGCATTCTTCACAACGTATGCAATGTTGGCACTTTTCTGGGCTGAGATATCTTAT
CAAGCACGTGGTCTAGAGACTGAAGGGCTTAGATCAGGTTTCTACACTATTAATGGTGTAATATATGTGATACAGGTAAA
GCAAGTTATCTCTAAAAGTCTGTATTGATTAGTGATTGCTATTTATCAGATTTTGTATAATTCCGTTAGCATTGCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis