Browse Element(s) Details


OsAffx.2975.1.S1_at

Description tigr:9630.m04455
TID=OsAffx.2975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:MJG14.22
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4590011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45860Os.53431.1.S1_at11/112+27953928..27954689expressed protein
LOC_Os02g45870Os.53134.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45870Os.53054.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45880OsAffx.12512.1.S1_at11/112+27959724..27960431expressed protein
LOC_Os02g45890OsAffx.2974.1.S1_s_at11/112+27961606..27962975Sulfotransferase domain containing protein, expressed
LOC_Os02g45900OsAffx.2975.1.S1_at11/112+27964235..27966164hypothetical protein
LOC_Os02g45910OsAffx.12696.1.S1_at11/112+27971718..27973941tRNA-splicing endonuclease positive effector, putative
LOC_Os02g45920Os.17229.1.S1_at10/112+27979070..27983486expressed protein
LOC_Os02g45930Os.49582.1.S1_at11/112+27983621..27984706expressed protein
LOC_Os02g45940OsAffx.24745.1.S1_at11/112+27988208..27988861Histone H4, putative, expressed
LOC_Os02g45950OsAffx.12513.1.S1_at10/112+27989249..27992709expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2975.1.S1_at--827--7371Chr02:27965287..27965311 (25 bp)
GTGACCCGGATCGTTCAGAGATTGT
LOC_Os02g45900
OsAffx.2975.1.S1_at--255--1031Chr02:27965258..27965282 (25 bp)
AGGTACACATTGCATCATGCCCTTG
LOC_Os02g45900
OsAffx.2975.1.S1_at--286--611Chr02:27965242..27965266 (25 bp)
ATGCCCTTGCATTCTGGCATGGCAT
LOC_Os02g45900
OsAffx.2975.1.S1_at--770--8271Chr02:27965227..27965251 (25 bp)
GGCATGGCATCGCTGAGCTCAGATA
LOC_Os02g45900
OsAffx.2975.1.S1_at--535--10011Chr02:27965204..27965228 (25 bp)
TAGCTTGGTTTGTGCAGAGTCGGTT
LOC_Os02g45900
OsAffx.2975.1.S1_at--307--3371Chr02:27965075..27965099 (25 bp)
CACCGTGAAGGTGCGATCCGTGGAC
LOC_Os02g45900
OsAffx.2975.1.S1_at--18--1511Chr02:27964831..27964854 (24 bp)
AGCACTGTCTTTGGATTCTTGGCAA
LOC_Os02g45900
OsAffx.2975.1.S1_at--807--911Chr02:27964742..27964766 (25 bp)
AGGCTGCCTCTTTAACGCGAGCGAG
LOC_Os02g45900
OsAffx.2975.1.S1_at--256--2451Chr02:27964705..27964729 (25 bp)
AACAATGCGATAATTAGGGCCGTCA
LOC_Os02g45900
OsAffx.2975.1.S1_at--327--9371Chr02:27964680..27964704 (25 bp)
TCGAGCTGGACGAAGTCGACGACCT
LOC_Os02g45900
OsAffx.2975.1.S1_at--912--1311Chr02:27964650..27964674 (25 bp)
AGATGGACTCCCTGCGTCTTAGCGG
LOC_Os02g45900
Target Sequence 
GTGACCCGGATCGTTCAGAGATTGTTCAAAGGTACACATTGCATCATGCCCTTGCATTCTGGCATGGCATCGCTGAGCTC
AGATAGCTTGGTTTGTGCAGAGTCGGTTGACACCGGGAGGAAGCTGTGCGTGGGCGTGGTGTCGCCGTACAAGGGGCAGG
TCCGCGCCATCCAGGAGAGGCTCGGGAAGGCGTACGAGACGCACGGGGGCTTCACCGTGAAGGTGCGATCCGTGGACGGG
TTCCAGGGCGCCGAGGAGGACATCATCATCTTCTCCGCCGTGCGCAGCAACACCACCGGATCGGTCGGGTTCCTCTCCAA
CGTCAACCGCACCAACGTCGCGCTGACCCGGGCCAAGCACTGTCTTTGGATTCTTGGCAATGCAAATACTCTAGCGAGTA
GCAAAGACCATTTGGCAGGCTGCCTCTTTAACGCGAGCGAGGATAAAGAACTCAACAATGCGATAATTAGGGCCGTCATC
GAGCTGGACGAAGTCGACGACCTGCTCGAGATGGACTCCCTGCGTCTTAGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis