Browse Element(s) Details


Os.53431.1.S1_at

Description gb:AK072580.1
DB_XREF= gi:32982603
TID=Os.53431.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023124L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023124L24, full insert sequence.
FL= gb:AK072580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4586011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45860Os.53431.1.S1_at11/112+27953928..27954689expressed protein
LOC_Os02g45870Os.53134.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45870Os.53054.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45880OsAffx.12512.1.S1_at11/112+27959724..27960431expressed protein
LOC_Os02g45890OsAffx.2974.1.S1_s_at11/112+27961606..27962975Sulfotransferase domain containing protein, expressed
LOC_Os02g45900OsAffx.2975.1.S1_at11/112+27964235..27966164hypothetical protein
LOC_Os02g45910OsAffx.12696.1.S1_at11/112+27971718..27973941tRNA-splicing endonuclease positive effector, putative
LOC_Os02g45920Os.17229.1.S1_at10/112+27979070..27983486expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53431.1.S1_at--35--4131Chr02:27954001..27954025 (25 bp)
CGCAGAGGAGCGTCACGTCGTCAGA
LOC_Os02g45860
Os.53431.1.S1_at--648--1391Chr02:27954023..27954047 (25 bp)
AGACGCCTTGTCTGTGAGTAAAACA
LOC_Os02g45860
Os.53431.1.S1_at--917--9211Chr02:27954148..27954172 (25 bp)
TCCACATGGACTGCGAGGGCTGCGA
LOC_Os02g45860
Os.53431.1.S1_at--760--731Chr02:27954192..27954295 (25 bp)
ATGTCCCGGCTCGAAGGCGTGAGCA
LOC_Os02g45860
Os.53431.1.S1_at--651--1171Chr02:27954422..27954446 (25 bp)
AGTACTACCCGTTCGCGATCCAGTA
LOC_Os02g45860
Os.53431.1.S1_at--504--9211Chr02:27954440..27954464 (25 bp)
TCCAGTACCTGGAGGACGACACCTA
LOC_Os02g45860
Os.53431.1.S1_at--147--971Chr02:27954452..27954476 (25 bp)
AGGACGACACCTACATGGCGACGCA
LOC_Os02g45860
Os.53431.1.S1_at--271--2231Chr02:27954476..27954500 (25 bp)
ACAAGTACTACGTCCACGGCTACAA
LOC_Os02g45860
Os.53431.1.S1_at--411--10491Chr02:27954628..27954652 (25 bp)
TTAAAATCCTACATGCCAGCGACAG
LOC_Os02g45860
Os.53431.1.S1_at--576--2091Chr02:27954638..27954662 (25 bp)
ACATGCCAGCGACAGATACATATCT
LOC_Os02g45860
Os.53431.1.S1_at--1158--211Chr02:27954657..27954681 (25 bp)
ATATCTGACCAAATCGAACAAGCTA
LOC_Os02g45860
Target Sequence 
CGCAGAGGAGCGTCACGTCGTCAGACGCCTTGTCTGTGAGTAAAACATATCGTGGAGATGAACGTCCACATGGACTGCGA
GGGCTGCGAGAAGCGCGTGAGGAAGGCCATGTCCCGGCTCGAAGGCGTGAGCACGGTGGAGATCGACATGGACACGCAGA
AGGTGACGGTGACGGGGTACGTGGACCGGCGGGAGGTGCTCCGGGCGGCGCGGCGGACGGGGAGGGCGGCGGAGTTCTGG
CCGTGGCCGTACGACGGCGAGTACTACCCGTTCGCGATCCAGTACCTGGAGGACGACACCTACATGGCGACGCACAAGTA
CTACGTCCACGGCTACAACGCCCCGGTGATCGGCTCCTACCCCAACCACGCCTTCACCCACATCGTCGACGACCACGCCC
TCGCCTTCTTCCACGACGACAACGTCCACGCCTGCTCCATCATGTGACCTAAAATATAATCTTATTTAAAATCCTACATG
CCAGCGACAGATACATATCTGACCAAATCGAACAAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis