Browse Element(s) Details


OsAffx.22499.1.S1_at

Description tigr:9635.m00422
TID=OsAffx.22499.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0490011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04840Os.12627.1.S1_at11/117+2134902..2136687Oxygen-evolving enhancer protein 2, chloroplast precursor, putative, expressed
LOC_Os07g04860Os.47348.1.A1_at11/117+2139036..2142269transposon protein, putative, unclassified, expressed
LOC_Os07g04850Os.17862.1.S1_at11/117+2142463..2150099snoRNA binding domain containing protein, putative, expressed
LOC_Os07g04880OsAffx.28274.1.S1_at11/117+2154204..2155852hypothetical protein
LOC_Os07g04890OsAffx.28275.1.S1_at10/117+2157853..2158588hypothetical protein
LOC_Os07g04900OsAffx.22499.1.S1_at11/117+2160944..2165422NB-ARC domain containing protein
LOC_Os07g04910Os.27992.1.S1_at11/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04910OsAffx.2974.1.S1_s_at1/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04930Os.7767.1.S1_at11/117+2174869..2175940expressed protein
LOC_Os07g04940NANA7+2177972..2179438hypothetical protein
LOC_Os07g04950NANA7+2180140..2180943expressed protein
LOC_Os07g04960Os.36708.1.S1_at11/117+2182550..2183296expressed protein
LOC_Os07g04970OsAffx.28276.1.S1_x_at11/117+2185812..2187239Transferase family protein
LOC_Os07g04970OsAffx.7105.1.S1_x_at2/117+2185812..2187239Transferase family protein
LOC_Os07g04980OsAffx.5213.2.S1_at11/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_x_at10/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_at8/117+2188976..2191512hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22499.1.S1_at--365--9651Chr07:2161516..2161540 (25 bp)
TCAAACTTGACCTCTCTCACTAAAT
LOC_Os07g04900
OsAffx.22499.1.S1_at--1058--9751Chr07:2161464..2161488 (25 bp)
TAAGGAAGGGCCTATTGCCTCTCCT
LOC_Os07g04900
OsAffx.22499.1.S1_at--145--4831Chr07:2161438..2161462 (25 bp)
GCTCAGGGTCAGCTCAGCAACTTAA
LOC_Os07g04900
OsAffx.22499.1.S1_at--48--1371Chr07:2161343..2161367 (25 bp)
AGAGCAGCTTCATCTTCTTGAGCAT
LOC_Os07g04900
OsAffx.22499.1.S1_at--642--91Chr07:2161320..2161344 (25 bp)
ATTCCTCCAAACTGCGGGTGCTTGA
LOC_Os07g04900
OsAffx.22499.1.S1_at--311--8211Chr07:2161279..2161303 (25 bp)
GGAATCCTTGTGAAGCCGATCTGCA
LOC_Os07g04900
OsAffx.22499.1.S1_at--352--6471Chr07:2161126..2161150 (25 bp)
GATAAGCTGCGGTGCCTTCCTGCGG
LOC_Os07g04900
OsAffx.22499.1.S1_at--22--9131Chr07:2161106..2161130 (25 bp)
TGCGGGCCTTCATAGACTTACCAAC
LOC_Os07g04900
OsAffx.22499.1.S1_at--561--6551Chr07:2161067..2161091 (25 bp)
GATTATGAACTGTCCATCCATCCAG
LOC_Os07g04900
OsAffx.22499.1.S1_at--943--871Chr07:2161029..2161053 (25 bp)
ATGGCCTCCCAGGTTCACTGAAATA
LOC_Os07g04900
OsAffx.22499.1.S1_at--790--5591Chr07:2161010..2161034 (25 bp)
GAAATACTTCATAGTCCGCGACAAC
LOC_Os07g04900
Target Sequence 
TCAAACTTGACCTCTCTCACTAAATTATTCATAGAAGATTGCGGGGAGTATTTAAGGAAGGGCCTATTGCCTCTCCTTGC
TCAGGGTCAGCTCAGCAACTTAATTGTCTACAAAACATATGGGTTGTTTGCTGGTGTATTGGATTCCATACTCAGGGGAG
CGCAGGAAGAACAAGAGCAGCTTCATCTTCTTGAGCATTCCTCCAAACTGCGGGTGCTTGAAACGGATGACTTGGCGGGA
ATCCTTGTGAAGCCGATCTGCAGGCTCCTCTCTTCCTCACTCACCAACCTAACACTCCAAGGAAACTCAGAGGTGAAACG
CTTCACAAATGAACAAGAGGAGGCCCTTCAGCTCCTCACCTTCCTTCAAGACCTCAAATTTATTCACTACGATAAGCTGC
GGTGCCTTCCTGCGGGCCTTCATAGACTTACCAACCTCAAGAGATTAATGATTATGAACTGTCCATCCATCCAGTCACTG
CCCAAGGATGGCCTCCCAGGTTCACTGAAATACTTCATAGTCCGCGACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis