Browse Element(s) Details


Os.7767.1.S1_at

Description gb:AK108897.1
DB_XREF= gi:32994106
TID=Os.7767.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7767 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU174355(S5213),AU102018(S5213)~proline-rich protein-like (OJ1351_C05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-F01, full insert sequence.
FL= gb:AK108897.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0493011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04850Os.17862.1.S1_at11/117+2142463..2150099snoRNA binding domain containing protein, putative, expressed
LOC_Os07g04880OsAffx.28274.1.S1_at11/117+2154204..2155852hypothetical protein
LOC_Os07g04890OsAffx.28275.1.S1_at10/117+2157853..2158588hypothetical protein
LOC_Os07g04900OsAffx.22499.1.S1_at11/117+2160944..2165422NB-ARC domain containing protein
LOC_Os07g04910Os.27992.1.S1_at11/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04910OsAffx.2974.1.S1_s_at1/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04930Os.7767.1.S1_at11/117+2174869..2175940expressed protein
LOC_Os07g04940NANA7+2177972..2179438hypothetical protein
LOC_Os07g04950NANA7+2180140..2180943expressed protein
LOC_Os07g04960Os.36708.1.S1_at11/117+2182550..2183296expressed protein
LOC_Os07g04970OsAffx.28276.1.S1_x_at11/117+2185812..2187239Transferase family protein
LOC_Os07g04970OsAffx.7105.1.S1_x_at2/117+2185812..2187239Transferase family protein
LOC_Os07g04980OsAffx.5213.2.S1_at11/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_x_at10/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_at8/117+2188976..2191512hypothetical protein
LOC_Os07g04990Os.8112.1.S1_at11/117+2192109..2195348oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05000Os.11674.1.S1_at11/117+2195873..2199716oxidoreductase, aldo/keto reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7767.1.S1_at--149--10671Chr07:2175371..2175395 (25 bp)
TTCCGGCGGTGCCAACCGTGCCGAA
LOC_Os07g04930
Os.7767.1.S1_at--1004--9371Chr07:2175619..2175643 (25 bp)
TCGATTCCGGCGGTGCCCAAGGTGA
LOC_Os07g04930
Os.7767.1.S1_at--400--3571Chr07:2175698..2175722 (25 bp)
CATAATTAAGGACGCTGCCAGTGCT
LOC_Os07g04930
Os.7767.1.S1_at--131--5811Chr07:2175708..2175732 (25 bp)
GACGCTGCCAGTGCTTGTATATTTA
LOC_Os07g04930
Os.7767.1.S1_at--1075--7311Chr07:2175718..2175742 (25 bp)
GTGCTTGTATATTTAGTGGGTCATT
LOC_Os07g04930
Os.7767.1.S1_at--627--6791Chr07:2175762..2175786 (25 bp)
GTTATGTATTAATTTCCCCTGCTTG
LOC_Os07g04930
Os.7767.1.S1_at--680--10491Chr07:2175770..2175794 (25 bp)
TTAATTTCCCCTGCTTGATTTGTTT
LOC_Os07g04930
Os.7767.1.S1_at--331--10611Chr07:2175794..2175818 (25 bp)
TTCTGTGTGTAAATGCATGTTGTAT
LOC_Os07g04930
Os.7767.1.S1_at--191--10791Chr07:2175842..2175866 (25 bp)
TTGTAATTTGTTCAAGCTGTACATG
LOC_Os07g04930
Os.7767.1.S1_at--484--6111Chr07:2175867..2175891 (25 bp)
GAGTGCGCGGCTATAAGTATTTGTA
LOC_Os07g04930
Os.7767.1.S1_at--34--9591Chr07:2175914..2175938 (25 bp)
TCATTTTGGTTGGTTTAACTTCTGT
LOC_Os07g04930
Target Sequence 
TTCCGGCGGTGCCAACCGTGCCGAACGCCGCGTTGCCGCCCATGCCGGCCGTGCCCAAGGTGGCACTGCCGCCGATGCCC
GCGGTGCCGGCTGTGCCCACCGTCCCCGCGGTGGCGCTGCCGCCGATGCCCGCGGTGCCCGCTGTGCCGACGGCGACGTT
GCCGCCGATGCCGGCCGTGCCCGCCGTGCCGAACGCCGTGCTACCGCCNCATTCCGGNCCGTGCCGAAGGTGACGCTGCC
GCCGATGCCGTCGATTCCGGCGGTGCCCAAGGTGACGCTGCCGCCGATGCCATCCGTGCCGATGCCGTTCTTGGCACCTC
CTCCTTCGGCATAATTAAGGACGCTGCCAGTGCTTGTATATTTAGTGGGTCATTTGATTTGATTAATCTTTTGGTTATGT
ATTAATTTCCCCTGCTTGATTTGTTTTCTGTGTGTAAATGCATGTTGTATACTTGTATGCGAGTTAATTTTTTTTGTAAT
TTGTTCAAGCTGTACATGGAGTGCGCGGCTATAAGTATTTGTATATGGCATTTGTTTATATAAGTTCATTTTGGTTGGTT
TAACTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis