Browse Element(s) Details


OsAffx.28275.1.S1_at

Description gb:NM_186250.1
DB_XREF= gi:34899585
GEN=OJ1351_C05.15
TID=OsAffx.28275.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM (OJ1351_C05.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0489010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04830OsAffx.16088.1.S1_x_at11/117+2133407..2134336hypothetical protein
LOC_Os07g04840Os.12627.1.S1_at11/117+2134902..2136687Oxygen-evolving enhancer protein 2, chloroplast precursor, putative, expressed
LOC_Os07g04860Os.47348.1.A1_at11/117+2139036..2142269transposon protein, putative, unclassified, expressed
LOC_Os07g04850Os.17862.1.S1_at11/117+2142463..2150099snoRNA binding domain containing protein, putative, expressed
LOC_Os07g04880OsAffx.28274.1.S1_at11/117+2154204..2155852hypothetical protein
LOC_Os07g04890OsAffx.28275.1.S1_at10/117+2157853..2158588hypothetical protein
LOC_Os07g04900OsAffx.22499.1.S1_at11/117+2160944..2165422NB-ARC domain containing protein
LOC_Os07g04910Os.27992.1.S1_at11/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04910OsAffx.2974.1.S1_s_at1/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04930Os.7767.1.S1_at11/117+2174869..2175940expressed protein
LOC_Os07g04940NANA7+2177972..2179438hypothetical protein
LOC_Os07g04950NANA7+2180140..2180943expressed protein
LOC_Os07g04960Os.36708.1.S1_at11/117+2182550..2183296expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28275.1.S1_at--417--9211Chr07:2158441..2158465 (25 bp)
TCCACAGGCCGCAGTTGCCTCAGCT
LOC_Os07g04890
OsAffx.28275.1.S1_at--576--1591Chr07:2158462..2158486 (25 bp)
AGCTCCCTTCATGCGCCGTGCAGGA
LOC_Os07g04890
OsAffx.28275.1.S1_at--289--4171Chr07:2158475..2158499 (25 bp)
CGCCGTGCAGGAGTTTTACAAGAGA
LOC_Os07g04890
OsAffx.28275.1.S1_at--696--1211Chr07:2158486..2158510 (25 bp)
AGTTTTACAAGAGAGCAGCAGCCGC
LOC_Os07g04890
OsAffx.28275.1.S1_at--362--6811Chr07:2158487..2158511 (25 bp)
GTTTTACAAGAGAGCAGCAGCCGCC
LOC_Os07g04890
OsAffx.28275.1.S1_at--792--7391Chr07:2158523..2158547 (25 bp)
GTGATGACCGGCTACGCTGCGTCAT
LOC_Os07g04890
OsAffx.28275.1.S1_at--56--6311Chr07:2158525..2158549 (25 bp)
GATGACCGGCTACGCTGCGTCATGC
LOC_Os07g04890
OsAffx.28275.1.S1_at--812--5811Chr07:2158528..2158552 (25 bp)
GACCGGCTACGCTGCGTCATGCTGT
LOC_Os07g04890
OsAffx.28275.1.S1_at--454--9951Chr07:2158535..2158559 (25 bp)
TACGCTGCGTCATGCTGTCCCTCGA
LOC_Os07g04890
OsAffx.28275.1.S1_at--151--4091Chr07:2158563..2158587 (25 bp)
CGACCACCGCGGGAGGAACAGCATG
LOC_Os07g04890
OsAffx.28275.1.S1_at--707--6191Chr07:2158575..2158599 (25 bp)
GAGGAACAGCATGATATGTTCCTGG
NONE
Target Sequence 
TCCACAGGCCGCAGTTGCCTCAGCTCCCTTCATGCGCCGTGCAGGAGTTTTACAAGAGAGCAGCAGCCGCCGAGGGACGA
CGGTGATGACCGGCTACGCTGCGTCATGCTGTCCCTCGACGCCGACCACCGCGGGAGGAACAGCATGATATGTTCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis