Browse Element(s) Details


Os.36708.1.S1_at

Description gb:AK062842.1
DB_XREF= gi:32972860
TID=Os.36708.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm (OJ1351_C05.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-H06, full insert sequence.
FL= gb:AK062842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0496011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04890OsAffx.28275.1.S1_at10/117+2157853..2158588hypothetical protein
LOC_Os07g04900OsAffx.22499.1.S1_at11/117+2160944..2165422NB-ARC domain containing protein
LOC_Os07g04910Os.27992.1.S1_at11/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04910OsAffx.2974.1.S1_s_at1/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04930Os.7767.1.S1_at11/117+2174869..2175940expressed protein
LOC_Os07g04940NANA7+2177972..2179438hypothetical protein
LOC_Os07g04950NANA7+2180140..2180943expressed protein
LOC_Os07g04960Os.36708.1.S1_at11/117+2182550..2183296expressed protein
LOC_Os07g04970OsAffx.28276.1.S1_x_at11/117+2185812..2187239Transferase family protein
LOC_Os07g04970OsAffx.7105.1.S1_x_at2/117+2185812..2187239Transferase family protein
LOC_Os07g04980OsAffx.5213.2.S1_at11/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_x_at10/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_at8/117+2188976..2191512hypothetical protein
LOC_Os07g04990Os.8112.1.S1_at11/117+2192109..2195348oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05000Os.11674.1.S1_at11/117+2195873..2199716oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05010Os.44516.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010Os.15089.1.S1_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_at10/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36708.1.S1_at--464--4631Chr07:2182778..2182802 (25 bp)
GCTGTTCCGGCCATGCCGAAACCGA
LOC_Os07g04960
Os.36708.1.S1_at--287--6351Chr07:2182840..2182864 (25 bp)
GATCCCGGCCGTGCCAAAGGTGACA
LOC_Os07g04960
Os.36708.1.S1_at--747--7271Chr07:2182976..2183000 (25 bp)
GTGCCGCCGAACACTGTCGTCGTTC
LOC_Os07g04960
Os.36708.1.S1_at--1009--3331Chr07:2183088..2183112 (25 bp)
CACCCAAGGCCTAAACGTAGCTCGT
LOC_Os07g04960
Os.36708.1.S1_at--429--2591Chr07:2183101..2183125 (25 bp)
AACGTAGCTCGTTTCGCCATGTGTG
LOC_Os07g04960
Os.36708.1.S1_at--90--6851Chr07:2183111..2183135 (25 bp)
GTTTCGCCATGTGTGCACGATGAGT
LOC_Os07g04960
Os.36708.1.S1_at--554--9031Chr07:2183124..2183148 (25 bp)
TGCACGATGAGTGTCAGTGTGTGTT
LOC_Os07g04960
Os.36708.1.S1_at--711--8811Chr07:2183160..2183184 (25 bp)
TGTTGATTGTACGTTTTTGCATGGC
LOC_Os07g04960
Os.36708.1.S1_at--1136--4991Chr07:2183178..2183202 (25 bp)
GCATGGCGTACAGATATTTTGTCAT
LOC_Os07g04960
Os.36708.1.S1_at--350--8671Chr07:2183232..2183256 (25 bp)
TGTGGGCTTGTACTTGATTGAATTT
LOC_Os07g04960
Os.36708.1.S1_at--191--5251Chr07:2183261..2183285 (25 bp)
GAATCGGTTGTCGAGGTTTCTTGAC
LOC_Os07g04960
Target Sequence 
GCTGTTCCGGCCATGCCGAAACCGACGATCCCCACCATCGTCCCGGCGGTCACGTTACCGCCGATCCCGGCCGTGCCAAA
GGTGACATTGCCGCCGATGCCCGCCATCCCGACCGTGCCGGCGGTGACCATGCCACCGATGCCCGCCGTGCCGGCCGTGC
CGGCGGTGACTCTGCCGCCGATGCCCGCGGTGCCCACCGTGCCGCCGAACACTGTCGTCGTTCCCGCCGCCGTCGTGCCG
GCGTTGCCAAAGGTGGCGCTGCCGCCGATGGCCGCCGTCCCCAACGTTCCAATGCCATTCCTCGCGCCACCACCCAAGGC
CTAAACGTAGCTCGTTTCGCCATGTGTGCACGATGAGTGTCAGTGTGTGTTTAATGCTATTTTGTTGATTGTACGTTTTT
GCATGGCGTACAGATATTTTGTCATTCTTTCATGTATGTACTGTATACTATATATGTGGGCTTGTACTTGATTGAATTTT
ATGGAATCGGTTGTCGAGGTTTCTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis