Browse Element(s) Details


Os.27992.1.S1_at

Description gb:AK099414.1
DB_XREF= gi:32984623
TID=Os.27992.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.27992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome3, OSJNBa0091J19.7 (OJ1351_C05.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013005I15, full insert sequence.
FL= gb:AK059877.1 gb:AK099414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0491011/11Reticulon family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04850Os.17862.1.S1_at11/117+2142463..2150099snoRNA binding domain containing protein, putative, expressed
LOC_Os07g04880OsAffx.28274.1.S1_at11/117+2154204..2155852hypothetical protein
LOC_Os07g04890OsAffx.28275.1.S1_at10/117+2157853..2158588hypothetical protein
LOC_Os07g04900OsAffx.22499.1.S1_at11/117+2160944..2165422NB-ARC domain containing protein
LOC_Os07g04910Os.27992.1.S1_at11/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04910OsAffx.2974.1.S1_s_at1/117+2168943..2171113Reticulon family protein, expressed
LOC_Os07g04930Os.7767.1.S1_at11/117+2174869..2175940expressed protein
LOC_Os07g04940NANA7+2177972..2179438hypothetical protein
LOC_Os07g04950NANA7+2180140..2180943expressed protein
LOC_Os07g04960Os.36708.1.S1_at11/117+2182550..2183296expressed protein
LOC_Os07g04970OsAffx.28276.1.S1_x_at11/117+2185812..2187239Transferase family protein
LOC_Os07g04970OsAffx.7105.1.S1_x_at2/117+2185812..2187239Transferase family protein
LOC_Os07g04980OsAffx.5213.2.S1_at11/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_x_at10/117+2188976..2191512hypothetical protein
LOC_Os07g04980OsAffx.5213.1.S1_at8/117+2188976..2191512hypothetical protein
LOC_Os07g04990Os.8112.1.S1_at11/117+2192109..2195348oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os07g05000Os.11674.1.S1_at11/117+2195873..2199716oxidoreductase, aldo/keto reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27992.1.S1_at--987--2051Chr07:2170339..2170363 (25 bp)
ACATTGGTTCTGCAATTGGCACCCA
LOC_Os07g04910
Os.27992.1.S1_at--587--5511Chr07:2170367..2170391 (25 bp)
GAACAAGTTCTTGGGCACTCTTCAG
LOC_Os07g04910
Os.27992.1.S1_at--851--10631Chr07:2170534..2170558 (25 bp)
TTCGCGGCCGCTATCATTGGGAGCT
LOC_Os07g04910
Os.27992.1.S1_at--842--31Chr07:2170549..2170573 (25 bp)
ATTGGGAGCTGGTGCAATCTCCTCA
LOC_Os07g04910
Os.27992.1.S1_at--603--3191Chr07:2170563..2170587 (25 bp)
CAATCTCCTCACTGTCATTTACATT
LOC_Os07g04910
Os.27992.1.S1_at--766--2171Chr07:2170709..2170733 (25 bp)
ACACTCTCCCGGTGCTGTATGAGAA
LOC_Os07g04910
Os.27992.1.S1_at--211--8531Chr07:2170748..2170772 (25 bp)
TGGACGAGTTCCTGTACAACACACT
LOC_Os07g04910
Os.27992.1.S1_at--208--2191Chr07:2170768..2170792 (25 bp)
ACACTTGGCCTGCTTCAGAATCAGT
LOC_Os07g04910
Os.27992.1.S1_at--1106--8511Chr07:2170923..2170947 (25 bp)
TGGACAGATGTTAGCTTCCCCTGAA
LOC_Os07g04910
Os.27992.1.S1_at--798--7391Chr07:2170985..2171009 (25 bp)
GTGATGCTAGTGGTATACTCCTATA
LOC_Os07g04910
Os.27992.1.S1_at--379--1571Chr07:2171044..2171068 (25 bp)
AGCTAGTCTCATGTGTTTTGCCCAT
LOC_Os07g04910
Target Sequence 
ACATTGGTTCTGCAATTGGCACCCAAGTGAACAAGTTCTTGGGCACTCTTCAGGATGTGTCTTGTGGAAGAGACCTGAAG
AATTTTCTCCTGGTGATTGCCGGGTTCTTCGCGGCCGCTATCATTGGGAGCTGGTGCAATCTCCTCACTGTCATTTACAT
TGGATTTGTGTGTGCTCACACTCTCCCGGTGCTGTATGAGAAGAACCAAGAAAAAGTGGACGAGTTCCTGTACAACACAC
TTGGCCTGCTTCAGAATCAGTATCAGAAACTTGACAAGGGTGTCCTGGGCAAGGTGCCCAAAGGGATCATCAAGCTTAAG
AAGAGCGATTAGTTTCACTAGCTGCTGCTGCTGCTAATGCTGCGTACAGTCAATCAGAATACTGCGTAATTTGGACAGAT
GTTAGCTTCCCCTGAACAGTTAATTGTGTACAGTATTGGAAAACACCGTGTCAGTGATGCTAGTGGTATACTCCTATATT
GTAGGCCAAATTCATCAGTGGCAGATTGTTTCAGCTAGTCTCATGTGTTTTGCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis