Browse Element(s) Details


Os.47348.1.A1_at

Description gb:AK068893.1
DB_XREF= gi:32978918
TID=Os.47348.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001G24, full insert sequence.
FL= gb:AK068893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0486011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04760OsAffx.28272.1.S1_at11/117+2114544..2116079calcineurin-like phosphoesterase family protein, putative
LOC_Os07g04770OsAffx.29313.1.S1_at1/117+2117708..2120085transposon protein, putative, Mutator sub-class
LOC_Os07g04780NANA7+2121062..2121824hypothetical protein
LOC_Os07g04790OsAffx.10267.1.S1_at11/117+2123108..2123884F-box domain containing protein
LOC_Os07g04800OsAffx.28273.2.S1_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.2.S1_s_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.1.S1_at4/117+2124790..2125299hypothetical protein
LOC_Os07g04810Os.54639.1.S1_at11/117+2126764..2128349Protein kinase domain containing protein, expressed
LOC_Os07g04820Os.52735.1.S1_at10/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04820OsAffx.24030.1.S1_x_at3/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04830OsAffx.16088.1.S1_x_at11/117+2133407..2134336hypothetical protein
LOC_Os07g04840Os.12627.1.S1_at11/117+2134902..2136687Oxygen-evolving enhancer protein 2, chloroplast precursor, putative, expressed
LOC_Os07g04860Os.47348.1.A1_at11/117+2139036..2142269transposon protein, putative, unclassified, expressed
LOC_Os07g04850Os.17862.1.S1_at11/117+2142463..2150099snoRNA binding domain containing protein, putative, expressed
LOC_Os07g04880OsAffx.28274.1.S1_at11/117+2154204..2155852hypothetical protein
LOC_Os07g04890OsAffx.28275.1.S1_at10/117+2157853..2158588hypothetical protein
LOC_Os07g04900OsAffx.22499.1.S1_at11/117+2160944..2165422NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47348.1.A1_at--701--5311Chr07:2139260..2139284 (25 bp)
GAAGGTTGATGCACATACAGCGCAA
LOC_Os07g04860
Os.47348.1.A1_at--744--3471Chr07:2139222..2139246 (25 bp)
CAGGTCTCTAATCCTTCACAGAGCA
LOC_Os07g04860
Os.47348.1.A1_at--387--9251Chr07:2139211..2139235 (25 bp)
TCCTTCACAGAGCAGACCATGAGGT
LOC_Os07g04860
Os.47348.1.A1_at--1156--5031Chr07:2139200..2139224 (25 bp)
GCAGACCATGAGGTGTGATGATCAT
LOC_Os07g04860
Os.47348.1.A1_at--434--8671Chr07:2139187..2139211 (25 bp)
TGTGATGATCATGAAGCTCCCTTTC
LOC_Os07g04860
Os.47348.1.A1_at--859--4791Chr07:2139172..2139196 (25 bp)
GCTCCCTTTCTCCTGACAAGAACAA
LOC_Os07g04860
Os.47348.1.A1_at--146--3231Chr07:2139156..2139180 (25 bp)
CAAGAACAACCGACATTTTCAGCGT
LOC_Os07g04860
Os.47348.1.A1_at--100--7071Chr07:2139125..2139149 (25 bp)
GTAAGATATCTTTCTTCTAGCTGAA
LOC_Os07g04860
Os.47348.1.A1_at--456--9571Chr07:2139113..2139137 (25 bp)
TCTTCTAGCTGAAACATTTCGAGGG
LOC_Os07g04860
Os.47348.1.A1_at--573--6531Chr07:2139074..2139098 (25 bp)
GATTTCAATCTGTAATCTCAGTGAT
LOC_Os07g04860
Os.47348.1.A1_at--106--3071Chr07:2139061..2139085 (25 bp)
AATCTCAGTGATTGATATGTGTGAA
LOC_Os07g04860
Target Sequence 
GAAGGTTGATGCACATACAGCGCAAAATTCATGAAATNCAGGTCTCTAATCCTTCACAGAGCAGACCATGAGGTGTGATG
ATCATGAAGCTCCCTTTCTCCTGACAAGAACAACCGACATTTTCAGCGTCNCCATGTAAGATATCTTTCTTCTAGCTGAA
ACATTTCGAGGGGTAATGAAACTACTGATTTCAATCTGTAATCTCAGTGATTGATATGTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47348.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis