Browse Element(s) Details


OsAffx.28273.1.S1_at

Description gb:NM_186245.1
DB_XREF= gi:34899575
GEN=OJ1351_C05.8
TID=OsAffx.28273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm (OJ1351_C05.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g048004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04730OsAffx.28270.1.S1_at11/117+2097358..2101933expressed protein
LOC_Os07g04740OsAffx.28271.1.S1_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04740OsAffx.28271.1.S1_x_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04750OsAffx.22501.1.S1_at11/117+2110415..2111924F-box domain containing protein
LOC_Os07g04760OsAffx.28272.1.S1_at11/117+2114544..2116079calcineurin-like phosphoesterase family protein, putative
LOC_Os07g04770OsAffx.29313.1.S1_at1/117+2117708..2120085transposon protein, putative, Mutator sub-class
LOC_Os07g04780NANA7+2121062..2121824hypothetical protein
LOC_Os07g04790OsAffx.10267.1.S1_at11/117+2123108..2123884F-box domain containing protein
LOC_Os07g04800OsAffx.28273.2.S1_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.2.S1_s_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.1.S1_at4/117+2124790..2125299hypothetical protein
LOC_Os07g04810Os.54639.1.S1_at11/117+2126764..2128349Protein kinase domain containing protein, expressed
LOC_Os07g04820Os.52735.1.S1_at10/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04820OsAffx.24030.1.S1_x_at3/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04830OsAffx.16088.1.S1_x_at11/117+2133407..2134336hypothetical protein
LOC_Os07g04840Os.12627.1.S1_at11/117+2134902..2136687Oxygen-evolving enhancer protein 2, chloroplast precursor, putative, expressed
LOC_Os07g04860Os.47348.1.A1_at11/117+2139036..2142269transposon protein, putative, unclassified, expressed
LOC_Os07g04850Os.17862.1.S1_at11/117+2142463..2150099snoRNA binding domain containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28273.1.S1_at--931--5231Chr07:2125404..2125428 (25 bp)
GAATCACGTTATGGAGGAGGAGCTA
NONE
OsAffx.28273.1.S1_at--589--7235Chr05:28673651..28673671 (21 bp)
GTCCCCTAGCATTCCCGAAAATAGA
NONE
OsAffx.28273.1.S1_at--564--7631Chr07:2125329..2125353 (25 bp)
GGGAGCCAAAAATTCCATCGCAAAG
NONE
OsAffx.28273.1.S1_at--463--91Chr07:2125318..2125342 (25 bp)
ATTCCATCGCAAAGGCTTGAAGGGC
NONE
OsAffx.28273.1.S1_at--550--10671Chr07:2125302..2125326 (25 bp)
TTGAAGGGCGCCGATGGACTAAAAC
NONE
OsAffx.28273.1.S1_at--677--8091Chr07:2125287..2125311 (25 bp)
GGACTAAAACGGATGGCGCGGAATC
NONE
OsAffx.28273.1.S1_at--385--8011Chr07:2125103..2125301 (25 bp)
GGATGGCGCGGAATCAGCAACTCCT
NONE
OsAffx.28273.1.S1_at--900--391Chr07:2125091..2125113 (23 bp)
ATCAGCAACTCCTCATTCGGTCATT
LOC_Os07g04800
OsAffx.28273.1.S1_at--1064--9531Chr07:2125052..2125076 (25 bp)
TCTTGCCGGTAGCTTCCTCCTCTGG
LOC_Os07g04800
OsAffx.28273.1.S1_at--101--10011Chr07:2125043..2125067 (25 bp)
TAGCTTCCTCCTCTGGCTACTTCTT
LOC_Os07g04800
OsAffx.28273.1.S1_at--490--3911Chr07:2125031..2125055 (25 bp)
CTGGCTACTTCTTCTCGCCAGCGGT
LOC_Os07g04800
Target Sequence 
GAATCACGTTATGGAGGAGGAGCTATCCCGTTGGGGGACGATATCCCGTCCCCTAGCATTCCCGAAAATAGAAAAGGGAG
CCAAAAATTCCATCGCAAAGGCTTGAAGGGCGCCGATGGACTAAAACGGATGGCGCGGAATCAGCAACTCCTCATTCGGT
CATTCCCCTTCTCCCCCTTCTTGCCGGTAGCTTCCTCCTCTGGCTACTTCTTCTCGCCAGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis