Browse Element(s) Details


OsAffx.28270.1.S1_at

Description tigr:9635.m00404
TID=OsAffx.28270.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0473011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04690Os.11609.1.S1_at11/117+2078300..2081827UDP-glucose 4-epimerase family protein, expressed
LOC_Os07g04700Os.49202.1.S1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.24362.1.A1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.54102.1.S1_x_at1/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04709NANA7+2091281..2091911NA
LOC_Os07g04720OsAffx.28269.1.S1_x_at11/117+2092690..2093702hypothetical protein
LOC_Os07g04720OsAffx.19640.1.S1_at1/117+2092690..2093702hypothetical protein
LOC_Os07g04730OsAffx.28270.1.S1_at11/117+2097358..2101933expressed protein
LOC_Os07g04740OsAffx.28271.1.S1_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04740OsAffx.28271.1.S1_x_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04750OsAffx.22501.1.S1_at11/117+2110415..2111924F-box domain containing protein
LOC_Os07g04760OsAffx.28272.1.S1_at11/117+2114544..2116079calcineurin-like phosphoesterase family protein, putative
LOC_Os07g04770OsAffx.29313.1.S1_at1/117+2117708..2120085transposon protein, putative, Mutator sub-class
LOC_Os07g04780NANA7+2121062..2121824hypothetical protein
LOC_Os07g04790OsAffx.10267.1.S1_at11/117+2123108..2123884F-box domain containing protein
LOC_Os07g04800OsAffx.28273.2.S1_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.2.S1_s_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.1.S1_at4/117+2124790..2125299hypothetical protein
LOC_Os07g04810Os.54639.1.S1_at11/117+2126764..2128349Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28270.1.S1_at--622--9071Chr07:2097646..2097670 (25 bp)
TGCTTCCGCCGAGTGGAACATGGAT
LOC_Os07g04730
OsAffx.28270.1.S1_at--825--8511Chr07:2097633..2097657 (25 bp)
TGGAACATGGATTGGCTGCACGACG
LOC_Os07g04730
OsAffx.28270.1.S1_at--953--2111Chr07:2097629..2097653 (25 bp)
ACATGGATTGGCTGCACGACGCGAT
LOC_Os07g04730
OsAffx.28270.1.S1_at--309--1871Chr07:2097614..2097638 (25 bp)
ACGACGCGATGGCAGAACAGCAGCA
LOC_Os07g04730
OsAffx.28270.1.S1_at--382--1091Chr07:2097572..2097596 (25 bp)
AGTGGCAGGAGCAGAGTGTCTTCTC
LOC_Os07g04730
OsAffx.28270.1.S1_at--4--8271Chr07:2097569..2097593 (25 bp)
GGCAGGAGCAGAGTGTCTTCTCCCC
LOC_Os07g04730
OsAffx.28270.1.S1_at--335--1731Chr07:2097451..2097475 (25 bp)
ACCATCCGACGGGAGTTCATGCCGG
LOC_Os07g04730
OsAffx.28270.1.S1_at--531--551Chr07:2097448..2097472 (25 bp)
ATCCGACGGGAGTTCATGCCGGTGC
LOC_Os07g04730
OsAffx.28270.1.S1_at--509--6071Chr07:2097439..2097463 (25 bp)
GAGTTCATGCCGGTGCCGTGTCAAG
LOC_Os07g04730
OsAffx.28270.1.S1_at--74--591Chr07:2097433..2097457 (25 bp)
ATGCCGGTGCCGTGTCAAGTTCCAG
LOC_Os07g04730
OsAffx.28270.1.S1_at--690--7771Chr07:2097428..2097452 (25 bp)
GGTGCCGTGTCAAGTTCCAGCCCCA
LOC_Os07g04730
Target Sequence 
TGCTTCCGCCGAGTGGAACATGGATTGGCTGCACGACGCGATGGCAGAACAGCAGCAGCCACCGCCGCCGCCGCAGTGGC
AGGAGCAGAGTGTCTTCTCCCCCCCACCGCCTACAGCTTCATCCCCTCTCCATCACTCCATCTGGTTCACGCTCCATACC
CATCCTTCGCCCCCTCCACCTTCTCCACGATCCCCACCATCCGACGGGAGTTCATGCCGGTGCCGTGTCAAGTTCCAGCC
CCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis