Browse Element(s) Details


OsAffx.28273.2.S1_s_at

Description tigr:9635.m00411
TID=OsAffx.28273.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0480011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04730OsAffx.28270.1.S1_at11/117+2097358..2101933expressed protein
LOC_Os07g04740OsAffx.28271.1.S1_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04740OsAffx.28271.1.S1_x_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04750OsAffx.22501.1.S1_at11/117+2110415..2111924F-box domain containing protein
LOC_Os07g04760OsAffx.28272.1.S1_at11/117+2114544..2116079calcineurin-like phosphoesterase family protein, putative
LOC_Os07g04770OsAffx.29313.1.S1_at1/117+2117708..2120085transposon protein, putative, Mutator sub-class
LOC_Os07g04780NANA7+2121062..2121824hypothetical protein
LOC_Os07g04790OsAffx.10267.1.S1_at11/117+2123108..2123884F-box domain containing protein
LOC_Os07g04800OsAffx.28273.2.S1_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.2.S1_s_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.1.S1_at4/117+2124790..2125299hypothetical protein
LOC_Os07g04810Os.54639.1.S1_at11/117+2126764..2128349Protein kinase domain containing protein, expressed
LOC_Os07g04820Os.52735.1.S1_at10/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04820OsAffx.24030.1.S1_x_at3/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04830OsAffx.16088.1.S1_x_at11/117+2133407..2134336hypothetical protein
LOC_Os07g04840Os.12627.1.S1_at11/117+2134902..2136687Oxygen-evolving enhancer protein 2, chloroplast precursor, putative, expressed
LOC_Os07g04860Os.47348.1.A1_at11/117+2139036..2142269transposon protein, putative, unclassified, expressed
LOC_Os07g04850Os.17862.1.S1_at11/117+2142463..2150099snoRNA binding domain containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28273.2.S1_s_at--138--8511Chr07:2125007..2125031 (25 bp)
TGGCACCGGCTGCTGTGAGGAGGCG
LOC_Os07g04800
OsAffx.28273.2.S1_s_at--583--5071Chr07:2124979..2125003 (25 bp)
GCAGCGTCGGCTGCTGCAAGGAGGA
LOC_Os07g04800
OsAffx.28273.2.S1_s_at--365--4651Chr07:2124950..2124974 (25 bp)
GCGTCGAAGGCCTCGATAGCCTGGT
LOC_Os07g04800
OsAffx.28273.2.S1_s_at--75--5291Chr07:2124945..2124969 (25 bp)
GAAGGCCTCGATAGCCTGGTTGGAA
LOC_Os07g04800
OsAffx.28273.2.S1_s_at--1123--9971Chr07:2124934..2124958 (25 bp)
TAGCCTGGTTGGAAGCCTTCACGCC
LOC_Os07g04800
OsAffx.28273.2.S1_s_at--424--10751Chr07:2124926..2124950 (25 bp)
TTGGAAGCCTTCACGCCCTCGAAGT
LOC_Os07g04800
OsAffx.28273.2.S1_s_at--556--1831Chr07:2124914..2124938 (25 bp)
ACGCCCTCGAAGTCTGCTGCCATGG
LOC_Os07g04800
OsAffx.28273.2.S1_s_at--558--2851Chr07:2124905..2124929 (25 bp)
AAGTCTGCTGCCATGGCACGCTAGG
LOC_Os07g04800
OsAffx.28273.2.S1_s_at--360--3351Chr07:2124889..2124913 (25 bp)
CACGCTAGGCGCTGAGGATGGGTTC
LOC_Os07g04800
OsAffx.28273.2.S1_s_at--207--8471Chr07:2124856..2124880 (25 bp)
TGGCCGGTTAGCAAGGGAACTCAAA
LOC_Os07g04800
OsAffx.28273.2.S1_s_at--115--6771Chr07:2124850..2124874 (25 bp)
GTTAGCAAGGGAACTCAAAGAGGGA
LOC_Os07g04800
Target Sequence 
TGGCACCGGCTGCTGTGAGGAGGCGGCGGCAGCGTCGGCTGCTGCAAGGAGGAGGCGGCGTCGAAGGCCTCGATAGCCTG
GTTGGAAGCCTTCACGCCCTCGAAGTCTGCTGCCATGGCACGCTAGGCGCTGAGGATGGGTTCGGCGGCGGTGGCCGGTT
AGCAAGGGAACTCAAAGAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28273.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis