Browse Element(s) Details


Os.54639.1.S1_at

Description gb:AK106343.1
DB_XREF= gi:32991552
TID=Os.54639.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G11, full insert sequence.
FL= gb:AK106343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0481011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04730OsAffx.28270.1.S1_at11/117+2097358..2101933expressed protein
LOC_Os07g04740OsAffx.28271.1.S1_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04740OsAffx.28271.1.S1_x_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04750OsAffx.22501.1.S1_at11/117+2110415..2111924F-box domain containing protein
LOC_Os07g04760OsAffx.28272.1.S1_at11/117+2114544..2116079calcineurin-like phosphoesterase family protein, putative
LOC_Os07g04770OsAffx.29313.1.S1_at1/117+2117708..2120085transposon protein, putative, Mutator sub-class
LOC_Os07g04780NANA7+2121062..2121824hypothetical protein
LOC_Os07g04790OsAffx.10267.1.S1_at11/117+2123108..2123884F-box domain containing protein
LOC_Os07g04800OsAffx.28273.2.S1_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.2.S1_s_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.1.S1_at4/117+2124790..2125299hypothetical protein
LOC_Os07g04810Os.54639.1.S1_at11/117+2126764..2128349Protein kinase domain containing protein, expressed
LOC_Os07g04820Os.52735.1.S1_at10/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04820OsAffx.24030.1.S1_x_at3/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04830OsAffx.16088.1.S1_x_at11/117+2133407..2134336hypothetical protein
LOC_Os07g04840Os.12627.1.S1_at11/117+2134902..2136687Oxygen-evolving enhancer protein 2, chloroplast precursor, putative, expressed
LOC_Os07g04860Os.47348.1.A1_at11/117+2139036..2142269transposon protein, putative, unclassified, expressed
LOC_Os07g04850Os.17862.1.S1_at11/117+2142463..2150099snoRNA binding domain containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54639.1.S1_at--617--4071Chr07:2127207..2127231 (25 bp)
CGAGTTGATGATGGTCGACGACGCC
LOC_Os07g04810
Os.54639.1.S1_at--509--4431Chr07:2127176..2127200 (25 bp)
GCCATCAATCATCCGAGCGACGAGA
LOC_Os07g04810
Os.54639.1.S1_at--740--4091Chr07:2127159..2127183 (25 bp)
CGACGAGATCTGTAGTGGCAGCGAC
LOC_Os07g04810
Os.54639.1.S1_at--1153--7351Chr07:2126963..2126987 (25 bp)
GTGAACCCGTTCCTGCATCTCATGG
LOC_Os07g04810
Os.54639.1.S1_at--97--5951Chr07:2126895..2126919 (25 bp)
GAGCAGCGGAAACGCCGTCTCAGAA
LOC_Os07g04810
Os.54639.1.S1_at--357--1811Chr07:2126884..2126908 (25 bp)
ACGCCGTCTCAGAAAACGTCGTTGT
LOC_Os07g04810
Os.54639.1.S1_at--618--2551Chr07:2126870..2126894 (25 bp)
AACGTCGTTGTTTCTCACGGAAGTG
LOC_Os07g04810
Os.54639.1.S1_at--777--8191Chr07:2126852..2126876 (25 bp)
GGAAGTGACGGAATCGTCTCGCTTT
LOC_Os07g04810
Os.54639.1.S1_at--899--5251Chr07:2126842..2126866 (25 bp)
GAATCGTCTCGCTTTGACTACTGAA
LOC_Os07g04810
Os.54639.1.S1_at--17--2271Chr07:2126819..2126843 (25 bp)
AAATCTTTTGTCTGTGCGTGTGGGT
LOC_Os07g04810
Os.54639.1.S1_at--925--1731Chr07:2126787..2126811 (25 bp)
ACCTCGTTTCTTTGCATTCTACAAG
LOC_Os07g04810
Target Sequence 
CGAGTTGATGATGGTCGACGACGCCGCCGCCGCCATCAATCATCCGAGCGACGAGATCTGTAGTGGCAGCGACGGCGAGG
CCGTGGTGACCGTGGCCGAGGCCGACGACGAGCGGCGGTGCAAGGAGGCGGTGGTGAGGATGTACCAGGTGGCGTTCTGG
TGCGTGCAGCAGCGGCCGGAGGCGCGGCCGCCGATGGGCGCGGTGGTGAAGATGCTGGAGGGCGAGATGGACGTCGCGCC
TCCGGTGAACCCGTTCCTGCATCTCATGGCGGCTCCGGCGCCGGTGCCGAATCCATGGGCGACGACGACGGCGAGCAGCG
GAAACGCCGTCTCAGAAAACGTCGTTGTTTCTCACGGAAGTGACGGAATCGTCTCGCTTTGACTACTGAAATCTTTTGTC
TGTGCGTGTGGGTCGCCACGACCTCGTTTCTTTGCATTCTACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis