Browse Element(s) Details


Os.12627.1.S1_at

Description gb:AF022732.1
DB_XREF= gi:2570498
TID=Os.12627.1
CNT=121
FEA=FLmRNA
TIER=FL+Stack
STK=16
UG=Os.12627 (NCBI UniGene Cluster)
DEF=Oryza sativa 23kDa polypeptide of photosystem II mRNA, complete cds.
PROD=23kDa polypeptide of photosystem II
FL= gb:D49713.1 gb:AK104722.1 gb:AK065248.1 gb:AF022732.1 gb:AF052203.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0484011/11Oxygen-evolving enhancer protein 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04740OsAffx.28271.1.S1_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04740OsAffx.28271.1.S1_x_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04750OsAffx.22501.1.S1_at11/117+2110415..2111924F-box domain containing protein
LOC_Os07g04760OsAffx.28272.1.S1_at11/117+2114544..2116079calcineurin-like phosphoesterase family protein, putative
LOC_Os07g04770OsAffx.29313.1.S1_at1/117+2117708..2120085transposon protein, putative, Mutator sub-class
LOC_Os07g04780NANA7+2121062..2121824hypothetical protein
LOC_Os07g04790OsAffx.10267.1.S1_at11/117+2123108..2123884F-box domain containing protein
LOC_Os07g04800OsAffx.28273.2.S1_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.2.S1_s_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.1.S1_at4/117+2124790..2125299hypothetical protein
LOC_Os07g04810Os.54639.1.S1_at11/117+2126764..2128349Protein kinase domain containing protein, expressed
LOC_Os07g04820Os.52735.1.S1_at10/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04820OsAffx.24030.1.S1_x_at3/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04830OsAffx.16088.1.S1_x_at11/117+2133407..2134336hypothetical protein
LOC_Os07g04840Os.12627.1.S1_at11/117+2134902..2136687Oxygen-evolving enhancer protein 2, chloroplast precursor, putative, expressed
LOC_Os07g04860Os.47348.1.A1_at11/117+2139036..2142269transposon protein, putative, unclassified, expressed
LOC_Os07g04850Os.17862.1.S1_at11/117+2142463..2150099snoRNA binding domain containing protein, putative, expressed
LOC_Os07g04880OsAffx.28274.1.S1_at11/117+2154204..2155852hypothetical protein
LOC_Os07g04890OsAffx.28275.1.S1_at10/117+2157853..2158588hypothetical protein
LOC_Os07g04900OsAffx.22499.1.S1_at11/117+2160944..2165422NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009781biological_processphotosynthetic water oxidation
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009654cellular_componentoxygen evolving complex
GO:0019898cellular_componentextrinsic to membrane
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12627.1.S1_at--115--1031Chr07:2135954..2135978 (25 bp)
AGGTCGACTTCTTGCTTGGCAAGCA
LOC_Os07g04840
Os.12627.1.S1_at--711--2711Chr07:2135934..2135958 (25 bp)
AAGCAGGCCTACTCCGGCAAGACAG
LOC_Os07g04840
Os.12627.1.S1_at--305--4611Chr07:2135631..2135655 (25 bp)
GCGACGGCGAACATCCTGGAGAGCT
LOC_Os07g04840
Os.12627.1.S1_at--143--9911Chr07:2135580..2135604 (25 bp)
TACTACAGCGTAACGGTGCTGACGA
LOC_Os07g04840
Os.12627.1.S1_at--215--1091Chr07:2135537..2135561 (25 bp)
AGGGCGGCAAGCACCAGCTGATCAC
LOC_Os07g04840
Os.12627.1.S1_at--774--2591Chr07:2135502..2135526 (25 bp)
AACGACGGCAAGCTGTACATCTGCA
LOC_Os07g04840
Os.12627.1.S1_at--196--3251Chr07:2135494..2135518 (25 bp)
CAAGCTGTACATCTGCAAGGCGCAG
LOC_Os07g04840
Os.12627.1.S1_at--286--3651Chr07:2135410..2135434 (25 bp)
CTTCAGCGTCGCATGATCGTCGAAA
LOC_Os07g04840
Os.12627.1.S1_at--413--511Chr07:2135395..2135419 (25 bp)
ATCGTCGAAATCTCTATCTCAGCTT
LOC_Os07g04840
Os.12627.1.S1_at--1092--451Chr07:2135386..2135410 (25 bp)
ATCTCTATCTCAGCTTCTCTTTAAT
LOC_Os07g04840
Os.12627.1.S1_at--656--1551Chr07:2135375..2135399 (25 bp)
AGCTTCTCTTTAATCCCTAGCGAAT
LOC_Os07g04840
Target Sequence 
AGGTCGACTTCTTGCTTGGCAAGCAGGCCTACTCCGGCAAGACAGATTCNGAGGGTGGGTTTGAGTCGGACGCGGTGGCG
ACGGCGAACATCCTGGAGAGCTCGGCGCCGGTGGTGGGAGGGAAGCAGTACTACAGCGTAACGGTGCTGACGAGGACGGC
GGACGGCGACGAGGGCGGCAAGCACCAGCTGATCACGGCCACCGTCAACGACGGCAAGCTGTACATCTGCAAGGCGCAGG
CCGGCGACAAGAGGTGGTTCAAGGGCGCCAGGAAGNTTCGGTCGAGAGCGCAGCCAGCTCCTTCAGCGTCGCATGATCGT
CGAAATCTCTATCTCAGCTTCTCTTTAATCCCTAGCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis