Browse Element(s) Details


Os.11609.1.S1_at

Description gb:AK065558.1
DB_XREF= gi:32975576
TID=Os.11609.1
CNT=50
FEA=FLmRNA
TIER=FL+Stack
STK=23
UG=Os.11609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsUEL-1 mRNA for UDP-galactose 4-epimerase-like protein, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033B01, full insert sequence.
FL= gb:AK099183.1 gb:AK059685.1 gb:AK099140.1 gb:AB096864.1 gb:AK065558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0469011/11UDP-glucose 4-epimerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04650OsAffx.28267.1.S1_at11/117+2060481..2062147Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g04660OsAffx.16085.1.S1_at11/117+2063509..2064003ABC transporter family protein, putative
LOC_Os07g04670OsAffx.28268.1.S1_at11/117+2065644..2066474hypothetical protein
LOC_Os07g04690Os.11609.1.S1_at11/117+2078300..2081827UDP-glucose 4-epimerase family protein, expressed
LOC_Os07g04700Os.49202.1.S1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.24362.1.A1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.54102.1.S1_x_at1/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04709NANA7+2091281..2091911NA
LOC_Os07g04720OsAffx.28269.1.S1_x_at11/117+2092690..2093702hypothetical protein
LOC_Os07g04720OsAffx.19640.1.S1_at1/117+2092690..2093702hypothetical protein
LOC_Os07g04730OsAffx.28270.1.S1_at11/117+2097358..2101933expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0019567biological_processarabinose biosynthesis
GO:0005794cellular_componentGolgi apparatus
GO:0003824molecular_functioncatalytic activity
GO:0050373molecular_functionUDP-arabinose 4-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11609.1.S1_at--1112--131Chr07:2080969..2080993 (25 bp)
ATTACATCGATGTCACTGACCTCGT
LOC_Os07g04690
Os.11609.1.S1_at--35--8931Chr07:2080985..2081009 (25 bp)
TGACCTCGTTGACGCCCATGTGAAG
LOC_Os07g04690
Os.11609.1.S1_at--925--7211Chr07:2081257..2081281 (25 bp)
GTCGACCCGGTGACTATGCCGAAGT
LOC_Os07g04690
Os.11609.1.S1_at--889--10131Chr07:2081271..2081295 (25 bp)
TATGCCGAAGTGTACAGCGATCCCG
LOC_Os07g04690
Os.11609.1.S1_at--912--5451Chr07:2081315..2081339 (25 bp)
GAACTGGACTGCTCAACATACCGAT
LOC_Os07g04690
Os.11609.1.S1_at--194--9711Chr07:2081327..2081351 (25 bp)
TCAACATACCGATCTCCTGGAGAGC
LOC_Os07g04690
Os.11609.1.S1_at--846--5991Chr07:2081346..2081370 (25 bp)
GAGAGCCTCAGGGTTGCCTGGACAT
LOC_Os07g04690
Os.11609.1.S1_at--128--4191Chr07:2081402..2081426 (25 bp)
CCCTCAGGCCATGGTTTTGTGAAGA
LOC_Os07g04690
Os.11609.1.S1_at--1095--5211Chr07:2081427..2081451 (25 bp)
GAATTTACCCTGTAGCATCTATTGG
LOC_Os07g04690
Os.11609.1.S1_at--1062--2871Chr07:2081502..2081526 (25 bp)
AAGGGCTTTCAATTGCTCACTCACA
LOC_Os07g04690
Os.11609.1.S1_at--397--1651Chr07:2081544..2081568 (25 bp)
AGCGCTTATGGTCATTCGTTCAATT
LOC_Os07g04690
Target Sequence 
ATTACATCGATGTCACTGACCTCGTTGACGCCCATGTGAAGGCGCTCAACAAGGCGGAAAGGGGCAAAGTTGGCATATAC
AATGTTGGCACAGGCAAAGGTAGGTCAGTGAAAGAATTTGTCGAAGCTTGCAAGAAGGCAACAGGAGTTGACATCAAGGT
CGACTACTTCCCTCGTCGACCCGGTGACTATGCCGAAGTGTACAGCGATCCCGCAAAGATCNAACAGCGAGCTGAACTGG
ACTGCTCAACATACCGATCTCCTGGAGAGCCTCAGGGTTGCCTGGACATGGCAGAAGAAGCACCGGAGCGGCTACGGACC
CCCTCAGGCCATGGTTTTGTGAAGAGAATTTACCCTGTAGCATCTATTGGCTGAAAACTTAAAAACTTAGGTGGATATAT
TCTTAGGAATGTTCATCATCAAGGGCTTTCAATTGCTCACTCACAGAAGTTATATGTAATATAGCGCTTATGGTCATTCG
TTCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis