Browse Element(s) Details


OsAffx.28269.1.S1_x_at

Description tigr:9635.m00403
TID=OsAffx.28269.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0472011/11hypothetical protein
LOC_Os09g369001/11WD-40 repeat protein MSI1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04690Os.11609.1.S1_at11/117+2078300..2081827UDP-glucose 4-epimerase family protein, expressed
LOC_Os07g04700Os.49202.1.S1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.24362.1.A1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.54102.1.S1_x_at1/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04709NANA7+2091281..2091911NA
LOC_Os07g04720OsAffx.28269.1.S1_x_at11/117+2092690..2093702hypothetical protein
LOC_Os07g04720OsAffx.19640.1.S1_at1/117+2092690..2093702hypothetical protein
LOC_Os07g04730OsAffx.28270.1.S1_at11/117+2097358..2101933expressed protein
LOC_Os07g04740OsAffx.28271.1.S1_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04740OsAffx.28271.1.S1_x_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04750OsAffx.22501.1.S1_at11/117+2110415..2111924F-box domain containing protein
LOC_Os07g04760OsAffx.28272.1.S1_at11/117+2114544..2116079calcineurin-like phosphoesterase family protein, putative
LOC_Os07g04770OsAffx.29313.1.S1_at1/117+2117708..2120085transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006625biological_processprotein targeting to peroxisome
GO:0007275biological_processdevelopment
GO:0016568biological_processchromatin modification
GO:0005634cellular_componentnucleus
GO:0016585cellular_componentchromatin remodeling complex
GO:0000166molecular_functionnucleotide binding
GO:0005053molecular_functionperoxisome targeting signal-2 binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28269.1.S1_x_at--1111--771Chr07:2093012..2093036 (25 bp)
ATGGAGGAGCACCAAAACTGGAAGA
LOC_Os07g04720
OsAffx.28269.1.S1_x_at--917--2551Chr07:2093027..2093047 (21 bp)
AACTGGAAGAAGAACGCGCTGCCTC
LOC_Os07g04720
OsAffx.28269.1.S1_x_at--784--9431Chr07:2093298..2093322 (25 bp)
TCGGTGCCGCACAATGGCGAGGTCA
LOC_Os07g04720
OsAffx.28269.1.S1_x_at--904--1292Chr09:21276420..21276444 (25 bp)
AGAGGCCGTACACGGTGGCTACCAA
LOC_Os09g36900
OsAffx.28269.1.S1_x_at--611--8471Chr07:2093470..2093494 (25 bp)
TGGCGCCAGTTCAGAGTACGGTGCC
LOC_Os07g04720
OsAffx.28269.1.S1_x_at--744--4551Chr07:2093472..2093496 (25 bp)
GCGCCAGTTCAGAGTACGGTGCCGT
LOC_Os07g04720
OsAffx.28269.1.S1_x_at--737--4171Chr07:2093473..2093497 (25 bp)
CGCCAGTTCAGAGTACGGTGCCGTT
LOC_Os07g04720
OsAffx.28269.1.S1_x_at--735--4411Chr07:2093474..2093498 (25 bp)
GCCAGTTCAGAGTACGGTGCCGTTC
LOC_Os07g04720
OsAffx.28269.1.S1_x_at--219--1671Chr07:2093517..2093541 (25 bp)
AGCCGATCCACCATCGCAGTCGACG
LOC_Os07g04720
OsAffx.28269.1.S1_x_at--325--9351Chr07:2093530..2093554 (25 bp)
TCGCAGTCGACGTGCCGACCTGTCG
LOC_Os07g04720
OsAffx.28269.1.S1_x_at--267--6712Chr12:19867294..19867318 (25 bp)
GTTCGCCGCGACATTGACGAAGATG
NONE
Target Sequence 
ATGGAGGAGCACCAAAACTGGAAGAAGAACGCGCTGCCTCGGCGGCGAGCGGCGCCGTCCCGACCCCGCTTGTGTCCATC
TCCCGCTCGGTGCCGCACAATGGCGAGGTCAACCACGCCCGCTGCATGCCGCAGAGGCCGTACACGGTGGCTACCAAGAC
CTGTGTGGATGAGGTGCATGTGTACCATCTTGGTGACGGCGGCGAGAAGAGCGACGTCGATGTGGTGCTCAGGGGGCATG
AAGCTGAGGGGTATGGGCTGGCGCCAGTTCAGAGTACGGTGCCGTTCCAGGTGAGCATCTCCACCAGCCGATCCACCATC
GCAGTCGACGTGCCGACCTGTCGGAGCACGGCCTCGCCGAGCCGCGGGTTCGCCGCGACATTGACGAAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28269.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis