Browse Element(s) Details


Os.49202.1.S1_at

Description gb:AK065452.1
DB_XREF= gi:32975470
TID=Os.49202.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013025M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025M19, full insert sequence.
FL= gb:AK065452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0470011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04650OsAffx.28267.1.S1_at11/117+2060481..2062147Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g04660OsAffx.16085.1.S1_at11/117+2063509..2064003ABC transporter family protein, putative
LOC_Os07g04670OsAffx.28268.1.S1_at11/117+2065644..2066474hypothetical protein
LOC_Os07g04690Os.11609.1.S1_at11/117+2078300..2081827UDP-glucose 4-epimerase family protein, expressed
LOC_Os07g04700Os.49202.1.S1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.24362.1.A1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.54102.1.S1_x_at1/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04709NANA7+2091281..2091911NA
LOC_Os07g04720OsAffx.28269.1.S1_x_at11/117+2092690..2093702hypothetical protein
LOC_Os07g04720OsAffx.19640.1.S1_at1/117+2092690..2093702hypothetical protein
LOC_Os07g04730OsAffx.28270.1.S1_at11/117+2097358..2101933expressed protein
LOC_Os07g04740OsAffx.28271.1.S1_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04740OsAffx.28271.1.S1_x_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04750OsAffx.22501.1.S1_at11/117+2110415..2111924F-box domain containing protein
LOC_Os07g04760OsAffx.28272.1.S1_at11/117+2114544..2116079calcineurin-like phosphoesterase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49202.1.S1_at--959--1911Chr07:2082705..2082729 (25 bp)
ACTGAACCGGTACACTGGTAGTTGT
LOC_Os07g04700
Os.49202.1.S1_at--1122--7691Chr07:2082659..2082683 (25 bp)
GGGTCATCCTGTACAACTGTACTCT
LOC_Os07g04700
Os.49202.1.S1_at--507--1951Chr07:2082644..2082668 (25 bp)
ACTGTACTCTTATTATAGACTCGAA
LOC_Os07g04700
Os.49202.1.S1_at--521--3131Chr07:2082621..2082645 (25 bp)
AATTAAGAACAACCACTGACATGCC
LOC_Os07g04700
Os.49202.1.S1_at--969--71Chr07:2082570..2082594 (25 bp)
ATTCTTTACCATATTGGTACCCAGT
LOC_Os07g04700
Os.49202.1.S1_at--198--7851Chr07:2082555..2082579 (25 bp)
GGTACCCAGTTTTGTATGCCATTGG
LOC_Os07g04700
Os.49202.1.S1_at--897--6591Chr07:2082509..2082533 (25 bp)
GATTGTAACTTGTTATCCGGAGAGT
LOC_Os07g04700
Os.49202.1.S1_at--620--9391Chr07:2082477..2082501 (25 bp)
TCGTTTCCGGTTGGTGTACAGTACT
LOC_Os07g04700
Os.49202.1.S1_at--1119--7431Chr07:2082464..2082488 (25 bp)
GTGTACAGTACTTGTCCTACTTGGT
LOC_Os07g04700
Os.49202.1.S1_at--452--9231Chr07:2082450..2082474 (25 bp)
TCCTACTTGGTACCTGGACGTGAGT
LOC_Os07g04700
Os.49202.1.S1_at--550--8111Chr07:2082435..2082459 (25 bp)
GGACGTGAGTAGTTCATCTGATTCT
LOC_Os07g04700
Target Sequence 
ACTGAACCGGTACACTGGTAGTTGTAAGTATAGTAGATGTTAACTGGGGTCATCCTGTACAACTGTACTCTTATTATAGA
CTCGAATTAAGAACAACCACTGACATGCCATCTTCCACCGTGAGAATAGAAAACCATTCTTTACCATATTGGTACCCAGT
TTTGTATGCCATTGGGGATATCAAAATGGTGTACTAGATTGTAACTTGTTATCCGGAGAGTTGGTAACTCGTTTCCGGTT
GGTGTACAGTACTTGTCCTACTTGGTACCTGGACGTGAGTAGTTCATCTGATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis