Browse Element(s) Details


OsAffx.28267.1.S1_at

Description tigr:9635.m00396
TID=OsAffx.28267.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0465011/11Zinc finger C-x8-C-x5-C-x3-H type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04590OsAffx.28270.2.S1_at11/117+2040785..2042485hypothetical protein
LOC_Os07g04600OsAffx.5211.1.S1_at11/117+2044857..2047490hypothetical protein
LOC_Os07g04610OsAffx.16083.1.S1_at11/117+2048397..2049157hypothetical protein
LOC_Os07g04620OsAffx.28265.1.S1_at11/117+2050708..2051394hypothetical protein
LOC_Os07g04630NANA7+2052778..2053215hypothetical protein
LOC_Os07g04650OsAffx.28267.1.S1_at11/117+2060481..2062147Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g04660OsAffx.16085.1.S1_at11/117+2063509..2064003ABC transporter family protein, putative
LOC_Os07g04670OsAffx.28268.1.S1_at11/117+2065644..2066474hypothetical protein
LOC_Os07g04690Os.11609.1.S1_at11/117+2078300..2081827UDP-glucose 4-epimerase family protein, expressed
LOC_Os07g04700Os.49202.1.S1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.24362.1.A1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.54102.1.S1_x_at1/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28267.1.S1_at--796--1091Chr07:2061186..2061210 (25 bp)
AGTGGACTCGGCGTTCGATCCTGGC
LOC_Os07g04650
OsAffx.28267.1.S1_at--897--6371Chr07:2061170..2061194 (25 bp)
GATCCTGGCGCGAGAGGCTGCACAC
LOC_Os07g04650
OsAffx.28267.1.S1_at--935--3911Chr07:2061013..2061037 (25 bp)
CTGGCATTCGGACTGGAGGAACACA
LOC_Os07g04650
OsAffx.28267.1.S1_at--70--2691Chr07:2060983..2061007 (25 bp)
AAGCTGTGCGCGGAATATTATTCCC
LOC_Os07g04650
OsAffx.28267.1.S1_at--569--151Chr07:2060969..2060993 (25 bp)
ATATTATTCCCGTGGGCTTGGTTGT
LOC_Os07g04650
OsAffx.28267.1.S1_at--1070--10811Chr07:2060948..2060972 (25 bp)
TTGTCCTCGTGGCAACACATGCAAG
LOC_Os07g04650
OsAffx.28267.1.S1_at--1112--2171Chr07:2060934..2060958 (25 bp)
ACACATGCAAGTACGCCCATGGAGA
LOC_Os07g04650
OsAffx.28267.1.S1_at--864--5391Chr07:2060622..2060646 (25 bp)
GAAGCTATGCAAGACGTTCACGAGT
LOC_Os07g04650
OsAffx.28267.1.S1_at--941--1691Chr07:2060577..2060601 (25 bp)
AGCCAACTGCAGGTTCGCGCATGGG
LOC_Os07g04650
OsAffx.28267.1.S1_at--975--2911Chr07:2060534..2060558 (25 bp)
AAGGAGCCGTGCTGGTATTTCTTCT
LOC_Os07g04650
OsAffx.28267.1.S1_at--870--8571Chr07:2060522..2060546 (25 bp)
TGGTATTTCTTCTCCGGTCAGACCT
LOC_Os07g04650
Target Sequence 
AGTGGACTCGGCGTTCGATCCTGGCGCGAGAGGCTGCACACACACCGGCCTCCACCGTCACTGGGCGTGGGCGGTTCGAG
TTCGTGCCCATTCCCGGCGCACCCTATGCTCCGCCGCCGTCATTCGCCCCCATCGCCGCCGGAGCTGGACCAGCAGCGCG
ACCGCTACAGCAGCTGGCATTCGGACTGGAGGAACACAAGACGAAGCTGTGCGCGGAATATTATTCCCGTGGGCTTGGTT
GTCCTCGTGGCAACACATGCAAGTACGCCCATGGAGAAGATGACCTGCGTTTGGTGGTGGCGGTGAGCTCTCTAGCCGAC
GCCGGTGAGGGCTCCTCGTCCTCGGATTCGTCCTTCGCCGCTTTGGGAGGGGAAGACAAGTACAAGACGAAGCTATGCAA
GACGTTCACGAGTGGTGGATTATGCCTGTTTGCAGCCAACTGCAGGTTCGCGCATGGGGAGGTGGAGCTTGGGAAGAAGG
AGCCGTGCTGGTATTTCTTCTCCGGTCAGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis