Browse Element(s) Details


OsAffx.5211.1.S1_at

Description tigr:9635.m00391
TID=OsAffx.5211.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0460011/11hypothetical protein
LOC_Os08g283501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04560OsAffx.16082.1.S1_at11/117+2021458..2023361No apical meristem protein
LOC_Os07g04570OsAffx.5210.1.S1_at10/117+2031013..2032041RNA recognition motif family protein
LOC_Os07g04580Os.57389.1.S1_at10/117+2033472..2035042Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os07g04590OsAffx.28270.2.S1_at11/117+2040785..2042485hypothetical protein
LOC_Os07g04600OsAffx.5211.1.S1_at11/117+2044857..2047490hypothetical protein
LOC_Os07g04610OsAffx.16083.1.S1_at11/117+2048397..2049157hypothetical protein
LOC_Os07g04620OsAffx.28265.1.S1_at11/117+2050708..2051394hypothetical protein
LOC_Os07g04630NANA7+2052778..2053215hypothetical protein
LOC_Os07g04650OsAffx.28267.1.S1_at11/117+2060481..2062147Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g04660OsAffx.16085.1.S1_at11/117+2063509..2064003ABC transporter family protein, putative
LOC_Os07g04670OsAffx.28268.1.S1_at11/117+2065644..2066474hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5211.1.S1_at--612--2771Chr07:2047232..2047256 (25 bp)
AAGACCAATGGCCAAGTACCTCTGC
LOC_Os07g04600
OsAffx.5211.1.S1_at--61--4411Chr07:2047209..2047233 (25 bp)
GCCAGCGGGTTTGTCCAGTTGATAA
LOC_Os07g04600
OsAffx.5211.1.S1_at--241--8711Chr07:2047198..2047222 (25 bp)
TGTCCAGTTGATAACTCGCTTGTTC
LOC_Os07g04600
OsAffx.5211.1.S1_at--69--31Chr07:2047171..2047195 (25 bp)
ATTGGAGACAGGGTCCTCTCAACAC
LOC_Os07g04600
OsAffx.5211.1.S1_at--487--7791Chr07:2047160..2047184 (25 bp)
GGTCCTCTCAACACTTGCATTGCTT
LOC_Os07g04600
OsAffx.5211.1.S1_at--293--6451Chr07:2046773..2047116 (25 bp)
GATACGGTTTCATGGAGGCCTTTGT
LOC_Os07g04600
OsAffx.5211.1.S1_at--247--6231Chr07:2046759..2046780 (22 bp)
GAGGCCTTTGTTGGAGATATGTCTA
LOC_Os07g04600
OsAffx.5211.1.S1_at--9--6051Chr07:2046746..2046770 (25 bp)
GAGATATGTCTAGTGCCGAGGCTGA
LOC_Os07g04600
OsAffx.5211.1.S1_at--827--1751Chr07:2046704..2046728 (25 bp)
ACCGTCCATTGAGTATCTGCAGGCT
LOC_Os07g04600
OsAffx.5211.1.S1_at--200--6631Chr07:2045060..2045080 (21 bp)
GTTGGGCCCAGCTACAAAGGTGCGT
LOC_Os07g04600
OsAffx.5211.1.S1_at--1080--1558Chr11:19261325..19261498 (25 bp)
AGCTACAAAGGTGCGTGTTCTCAAT
NONE
Target Sequence 
AAGACCAATGGCCAAGTACCTCTGCCAGCGGGTTTGTCCAGTTGATAACTCGCTTGTTCGGATTGGAGACAGGGTCCTCT
CAACACTTGCATTGCTTGGCAATTACTATAAAGCAAGTGATTACATTACTAACCTCAAAAGATACGGTTTCATGGAGGCC
TTTGTTGGAGATATGTCTAGTGCCGAGGCTGAAGAACTTGAGAATTTTTACCGTCCATTGAGTATCTGCAGGCTCAAAGA
TGATCAAATTGAAAGCTTGGTACGTAACAAAGACTGGAAGGTTATTGAACAAAGAATTGAGAAAAAACTTAGTAGTTGGA
AAGGTAATCTTCAGGGCAACATATTAGCTCCGGTGTTGGGCCCAGCTACAAAGGTGCGTGTTCTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis