Browse Element(s) Details


OsAffx.5210.1.S1_at

Description tigr:9635.m00388
TID=OsAffx.5210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0457010/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04550Os.46529.1.S1_a_at11/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g04550Os.17736.1.S1_at1/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g04560OsAffx.16082.1.S1_at11/117+2021458..2023361No apical meristem protein
LOC_Os07g04570OsAffx.5210.1.S1_at10/117+2031013..2032041RNA recognition motif family protein
LOC_Os07g04580Os.57389.1.S1_at10/117+2033472..2035042Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os07g04590OsAffx.28270.2.S1_at11/117+2040785..2042485hypothetical protein
LOC_Os07g04600OsAffx.5211.1.S1_at11/117+2044857..2047490hypothetical protein
LOC_Os07g04610OsAffx.16083.1.S1_at11/117+2048397..2049157hypothetical protein
LOC_Os07g04620OsAffx.28265.1.S1_at11/117+2050708..2051394hypothetical protein
LOC_Os07g04630NANA7+2052778..2053215hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5210.1.S1_at--458--5611Chr07:2031199..2031223 (25 bp)
GACAAGGACCACTTCATCAACGGCC
LOC_Os07g04570
OsAffx.5210.1.S1_at--110--3251NONE
CAACGGCCGCAAGGTATACATTAGA
NONE
OsAffx.5210.1.S1_at--1029--6951Chr07:2031602..2031626 (25 bp)
GTAGCACAACCAACAAAGTCATCAG
LOC_Os07g04570
OsAffx.5210.1.S1_at--54--8831Chr07:2031633..2031657 (25 bp)
TGCTAATGAAATGTCCAAGTACCTT
LOC_Os07g04570
OsAffx.5210.1.S1_at--164--1751Chr07:2031653..2031677 (25 bp)
ACCTTTGCCAGCGAGTTTGTTGGAT
LOC_Os07g04570
OsAffx.5210.1.S1_at--195--10371Chr07:2031850..2031874 (25 bp)
TTTTTCTTCAGCTTTGTAGTTGACA
LOC_Os07g04570
OsAffx.5210.1.S1_at--1055--2931Chr07:2031892..2031916 (25 bp)
AAGGCTGTCCATGGAAACATTTCTT
LOC_Os07g04570
OsAffx.5210.1.S1_at--663--2511Chr07:2031907..2031931 (25 bp)
AACATTTCTTCTACTCGTCTTGCAA
LOC_Os07g04570
OsAffx.5210.1.S1_at--471--5851Chr07:2031936..2031960 (25 bp)
GACCACCTCTGCAAGGTTTTGCGGA
LOC_Os07g04570
OsAffx.5210.1.S1_at--2--6811Chr07:2031951..2031975 (25 bp)
GTTTTGCGGATACTGTCAACGAGCC
LOC_Os07g04570
OsAffx.5210.1.S1_at--660--2591Chr07:2031968..2031992 (25 bp)
AACGAGCCGTGACACCCGGTGGCAA
LOC_Os07g04570
Target Sequence 
GACAAGGACCACTTCATCAACGGCCGCAAGGTATACATTAGAGTAGCACAACCAACAAAGTCATCAGGAGGATTGCTAAT
GAAATGTCCAAGTACCTTTGCCAGCGAGTTTGTTGGATTGGATGGTCGAGTTTTTTTCTTCAGCTTTGTAGTTGACAAAA
GTGACGAAGCTAATAAGGCTGTCCATGGAAACATTTCTTCTACTCGTCTTGCAAGCGAGACCACCTCTGCAAGGTTTTGC
GGATACTGTCAACGAGCCGTGACACCCGGTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis