Browse Element(s) Details


OsAffx.16082.1.S1_at

Description tigr:9635.m00387
TID=OsAffx.16082.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0456011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04530Os.4742.1.S1_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S2_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04540OsAffx.28263.1.S1_at11/117+2004905..2005690hypothetical protein
LOC_Os07g04550Os.46529.1.S1_a_at11/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g04550Os.17736.1.S1_at1/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g04560OsAffx.16082.1.S1_at11/117+2021458..2023361No apical meristem protein
LOC_Os07g04570OsAffx.5210.1.S1_at10/117+2031013..2032041RNA recognition motif family protein
LOC_Os07g04580Os.57389.1.S1_at10/117+2033472..2035042Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os07g04590OsAffx.28270.2.S1_at11/117+2040785..2042485hypothetical protein
LOC_Os07g04600OsAffx.5211.1.S1_at11/117+2044857..2047490hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16082.1.S1_at--1130--4671Chr07:2022881..2022903 (23 bp)
GCGGAAGTTTGGACCATCTGCCGAA
LOC_Os07g04560
OsAffx.16082.1.S1_at--742--471Chr07:2022894..2022918 (25 bp)
ATCTGCCGAATCTTCCAGAGGAACA
LOC_Os07g04560
OsAffx.16082.1.S1_at--421--3431Chr07:2022909..2022933 (25 bp)
CAGAGGAACATCACCCACAAGAAGC
LOC_Os07g04560
OsAffx.16082.1.S1_at--575--5151Chr07:2023081..2023105 (25 bp)
GCAACGTGAACGGTGGCTACAGCAA
LOC_Os07g04560
OsAffx.16082.1.S1_at--552--7531Chr07:2023093..2023117 (25 bp)
GTGGCTACAGCAACCAGCGCTACTT
LOC_Os07g04560
OsAffx.16082.1.S1_at--840--3371Chr07:2023107..2023131 (25 bp)
CAGCGCTACTTCCAGGAGCAATGGA
LOC_Os07g04560
OsAffx.16082.1.S1_at--194--9991Chr07:2023151..2023175 (25 bp)
TACCACAGTGTTTCATCAGCATGCG
LOC_Os07g04560
OsAffx.16082.1.S1_at--600--6571Chr07:2023222..2023246 (25 bp)
GATTCGGCCATGATCAGAGCGTTCT
LOC_Os07g04560
OsAffx.16082.1.S1_at--1059--4551Chr07:2023257..2023281 (25 bp)
GCGCCGAGCGATTTCTACTACAAGG
LOC_Os07g04560
OsAffx.16082.1.S1_at--101--6331Chr07:2023285..2023309 (25 bp)
GATGCAACGATGACATTTACAGGAT
LOC_Os07g04560
OsAffx.16082.1.S1_at--767--10291Chr07:2023300..2023324 (25 bp)
TTTACAGGATGGTGATGGAGCTCGC
LOC_Os07g04560
Target Sequence 
GCGGAAGTTTGGACCATCTGCCGAATCTTCCAGAGGAACATCACCCACAAGAAGCAGCCGCAGCCGCAGCTCGCCGTCGC
CGCCGCCGCGGTGCCGGCGCCGGTGCCGGACGCGACGAGCTCGATCACCGGCAGCCTCGAGTCCGACAGCGCCGGCGACG
ACGTCGTCGAGTACATGAACACCCTCCAGCCGCCGCCGGCGAGCAACGTGAACGGTGGCTACAGCAACCAGCGCTACTTC
CAGGAGCAATGGAACAGTAGCAGCAATGATAATACCACAGTGTTTCATCAGCATGCGGCGGCGGCGCCACCGCCGGAGCC
TTCGCCGGCGACGGCGATGGCCGGATTCGGCCATGATCAGAGCGTTCTCAGCTCGCCGGCGCCGAGCGATTTCTACTACA
AGGATGGATGCAACGATGACATTTACAGGATGGTGATGGAGCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis